Browse Element(s) Details


Os.27975.1.A1_at

Description gb:AK058656.1
DB_XREF= gi:32968674
TID=Os.27975.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative vesicle-associated membrane protein (OSJNBb0015K05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F08, full insert sequence.
FL= gb:AK058656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3635011/11MSP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein
LOC_Os10g36310OsAffx.18532.1.S1_at11/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36310OsAffx.20208.1.A1_x_at1/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36320NANA10+19080010..19080805hypothetical protein
LOC_Os10g36340OsAffx.18534.1.S1_at11/1110+19083661..19084407expressed protein
LOC_Os10g36350Os.27975.1.A1_at11/1110+19085952..19089076MSP domain containing protein, expressed
LOC_Os10g36360Os.14210.1.S1_at11/1110+19095851..19096532expressed protein
LOC_Os10g36370Os.10854.2.S1_x_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S1_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S2_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36380Os.35344.3.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380Os.35344.18.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380OsAffx.22940.5.S1_x_at2/1110+19112394..19118158transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27975.1.A1_at--719--1391Chr10:19087923..19087943 (21 bp)
AGACTGCAAGTCCTGTTGTTGAAAC
LOC_Os10g36350
Os.27975.1.A1_at--405--6311Chr10:19087269..19087751 (25 bp)
GATGAACAATACCTCGAGCTGTCCG
LOC_Os10g36350
Os.27975.1.A1_at--722--5891Chr10:19087254..19087277 (24 bp)
GAGCTGTCCGCTTTGGTTGCAAAAT
LOC_Os10g36350
Os.27975.1.A1_at--341--8091Chr10:19086383..19086549 (25 bp)
GGAGCTGTGATCATCTTTGTCAACC
LOC_Os10g36350
Os.27975.1.A1_at--384--7091Chr10:19086365..19086389 (25 bp)
GTCAACCCCATGTTGGTGGGCATAA
LOC_Os10g36350
Os.27975.1.A1_at--496--2091Chr10:19086306..19086330 (25 bp)
ACATCAAGGAGGCTTCTCGCTGGCA
LOC_Os10g36350
Os.27975.1.A1_at--265--9351Chr10:19086290..19086314 (25 bp)
TCGCTGGCATTCGTACTGGTGATTG
LOC_Os10g36350
Os.27975.1.A1_at--223--7591Chr10:19086266..19086290 (25 bp)
GGGCTACTTAGCATTATTCTGGGTT
LOC_Os10g36350
Os.27975.1.A1_at--927--2251Chr10:19086223..19086247 (25 bp)
AAATCTCATATTCCAGTCTAGTCAG
LOC_Os10g36350
Os.27975.1.A1_at--862--7871Chr10:19086098..19086122 (25 bp)
GGTTTACTGTTTACAAGTGTCCGAT
LOC_Os10g36350
Os.27975.1.A1_at--439--10471Chr10:19085988..19086012 (25 bp)
TTACTCCTATTGATTGTTACGTGTG
LOC_Os10g36350
Target Sequence 
AGACTGCAAGTCCTGTTGTTGAAACAAGAGTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCA
AAATTGACCGAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCTTTGTCAACCCC
ATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGT
ACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGAT
AANTTCTACAGTAAATAAANAGGTGACGTCGNTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAAC
AAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTNGTAG
TGGTAATCTANCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27975.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis