Browse Element(s) Details


Os.28015.1.S1_at

Description gb:AY177699.1
DB_XREF= gi:30313682
TID=Os.28015.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28015 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MADS32 mRNA, complete cds.
PROD=transcription factor MADS32
FL= gb:AY177699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5268010/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52630Os.16429.1.S1_at9/111+30578268..30581614Regulator of chromosome condensation family protein, expressed
LOC_Os01g52640Os.27322.2.S1_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.3.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.1.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52650Os.13994.1.S1_at11/111+30590230..30591228Pollen proteins Ole e I family protein, expressed
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed
LOC_Os01g52670OsAffx.9333.1.S1_at11/111+30603270..30604046expressed protein
LOC_Os01g52680Os.28015.1.S1_at10/111+30605264..30607659SRF-type transcription factor family protein, expressed
LOC_Os01g52690Os.23219.1.S1_at11/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52690Os.23219.2.S1_x_at10/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009911biological_processpositive regulation of flower development
GO:0010076biological_processmaintenance of floral meristem identity
GO:0010154biological_processfruit development
GO:0048440biological_processcarpel development
GO:0048441biological_processpetal development
GO:0048442biological_processsepal development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28015.1.S1_at--1079--9351Chr01:30607078..30607102 (25 bp)
TCGAGAGGTACGAGGCCACCACGCA
LOC_Os01g52680
Os.28015.1.S1_at--511--1711Chr01:30607061..30607085 (25 bp)
ACCACGCACACCAAGGTTTGGGCAG
LOC_Os01g52680
Os.28015.1.S1_at--765--1531Chr01:30606875..30606899 (25 bp)
AGCATGTGCGACCTCCTGGAGAAAC
LOC_Os01g52680
Os.28015.1.S1_at--995--2471Chr01:30606782..30606877 (25 bp)
AACAGCTGAGGTTCATGACGGTGGA
LOC_Os01g52680
Os.28015.1.S1_at--246--8551Chr01:30606719..30606743 (25 bp)
TGGAGCACAATCTGGAGGCCGCCAT
LOC_Os01g52680
Os.28015.1.S1_at--1050--6211Chr01:30606659..30606683 (25 bp)
GAGGCGAGATCTGCTACCTCCAGAA
LOC_Os01g52680
Os.28015.1.S1_at--300--3991NONE
CGGGCTGTGCGACAAGATTGCTCAT
NONE
Os.28015.1.S1_at--558--7511Chr01:30605454..30605478 (25 bp)
GTGGATCCACCTCACTAAGCAATGG
LOC_Os01g52680
Os.28015.1.S1_at--1161--1451Chr01:30605437..30605461 (25 bp)
AGCAATGGCTTGGACCTTAAACTGG
LOC_Os01g52680
Os.28015.1.S1_at--363--5791Chr01:30605305..30605329 (25 bp)
GACGCTTGACGTTCAGATTTCCTTT
LOC_Os01g52680
Os.28015.1.S1_at--413--10711Chr01:30605279..30605303 (25 bp)
TTGCTGCTTAGAGCCAGTGTTCTAT
LOC_Os01g52680
Target Sequence 
TCGAGAGGTACGAGGCCACCACGCACACCAAGGTTTGGGCAGATATCAGGCAGGAGAGGCGCGCCGAGCTGGAGAAGGTG
GGCAGCATGTGCGACCTCCTGGAGAAACAGCTGAGGTTCATGACGGTGGACGACGGCGAGGAGTACACGGTGCCGTCGCT
GGAGGCGCTGGAGCACAATCTGGAGGCCGCCATGCGCAAGGTGCGCTCCGAGAAGGACCGCAAGATCGGAGGCGAGATCT
GCTACCTCCAGAACATTATTAGGGGGCGACAAGAGGAGCGGTACGGGCTGTGCGACAAGATTGCTCATGCACAGACTCTG
AAGGATGTGGAATGTGGATCCACCTCACTAAGCAATGGCTTGGACCTTAAACTGGGGTTCAACTAGAAACAGATGGACGC
TTGACGTTCAGATTTCCTTTATTGCTGCTTAGAGCCAGTGTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis