Browse Element(s) Details


Os.28076.1.S1_at

Description gb:AK106560.1
DB_XREF= gi:32991769
TID=Os.28076.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative eukaryotic translation initiation factor 3 large subunit (P0684C01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B08, full insert sequence.
FL= gb:AK073457.1 gb:AK072604.1 gb:AK106560.1 gb:AK063986.1 gb:AK122166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0307011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28076.1.S1_at--549--5271Chr01:1170912..1170936 (25 bp)
GAATGAGCAGTTTAAGGAGCGCCAA
LOC_Os01g03070
Os.28076.1.S1_at--70--6211Chr01:1170818..1170842 (25 bp)
GAGGCACCTCTAATTGAGCAAGCTT
LOC_Os01g03070
Os.28076.1.S1_at--865--1351Chr01:1170774..1170798 (25 bp)
AGAGAAAATCCTTCATGAGCAAGAG
LOC_Os01g03070
Os.28076.1.S1_at--792--6011Chr01:1170653..1170677 (25 bp)
GAGAGATTGAGCTCAGCAAGCAACA
LOC_Os01g03070
Os.28076.1.S1_at--284--2151Chr01:1170602..1170626 (25 bp)
ACAGACTTTCTCGAATGTTGGAGCA
LOC_Os01g03070
Os.28076.1.S1_at--562--5931Chr01:1170202..1170606 (25 bp)
GAGCATAAGAACATTTTCCAGGAAA
LOC_Os01g03070
Os.28076.1.S1_at--834--5191Chr01:1170177..1170201 (25 bp)
GAATTGTCCAACGTCGTGAAGCTGA
LOC_Os01g03070
Os.28076.1.S1_at--885--1551Chr01:1170158..1170182 (25 bp)
AGCTGAGTTTAGTCGTCTTAAGAAA
LOC_Os01g03070
Os.28076.1.S1_at--592--3451Chr01:1170078..1170102 (25 bp)
CAGTGCGGAAGTTAATGTACTATCT
LOC_Os01g03070
Os.28076.1.S1_at--902--2511Chr01:1170052..1170076 (25 bp)
AACTTAGAAGAGCAGCGCCTCCAAA
LOC_Os01g03070
Os.28076.1.S1_at--264--8571Chr01:1169420..1169444 (25 bp)
TGGATGCAATTGCAGCCAAGCAGCT
LOC_Os01g03070
Target Sequence 
GAATGAGCAGTTTAAGGAGCGCCAAGAGATGGAGAAAAAACTACAGAAGACTGGTAAGCAAATGGATTACTTGGAGAGGG
CAAAAAGGCAGGAAGAGGCACCTCTAATTGAGCAAGCTTTTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAA
GAGCAGCTGAGAGAGATTGAGCTCAGCAAGCAACACCATGCAGGTGACCTGCAGGAGAAGAACAGACTTTCTCGAATGTT
GGAGCATAAGAACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGTCTTAAGAAAGAGAGGGATG
AAAGGACTAGTCAATTGATATCATCAAGGAAGCGTGAAAGGGATACAGTGCGGAAGTTAATGTACTATCTTAACTTAGAA
GAGCAGCGCCTCCAAAGGCTCCGTGAGGAAGAGGAAGCTAGAAAACGTGAAGAGGAAGAGAGGAGAAAGAGGGAAGAGAC
TGAGAGGAAGGCTAAGCTGGATGCAATTGCAGCCAAGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis