Browse Element(s) Details


Os.28088.1.S1_at

Description gb:AK058881.1
DB_XREF= gi:32968899
TID=Os.28088.1
CNT=47
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B06, full insert sequence.
FL= gb:AK058881.1 gb:AK059548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5805011/1140S ribosomal protein S18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57960Os.8208.1.S1_at11/113+32958969..32961879Cupin family protein, expressed
LOC_Os03g57970Os.18599.1.S1_at11/113+32961950..32962874Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein
LOC_Os03g58010Os.26768.1.S1_at11/113+32973610..32974488acetyltransferase, GNAT family protein, expressed
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed
LOC_Os03g58070Os.14883.1.S1_a_at11/113+33000291..33003846hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g58080Os.11858.1.S1_at11/113+33004350..33009554folate/biopterin transporter family protein, expressed
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006413biological_processtranslational initiation
GO:0005840cellular_componentribosome
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28088.1.S1_at--388--5431Chr03:32985001..32985025 (25 bp)
GAACCACCGTGGTCTGAGGCACTAC
LOC_Os03g58050
Os.28088.1.S1_at--1022--7591Chr03:32984958..32984982 (25 bp)
GGGCAGCACACCAAGACAACCGGAA
LOC_Os03g58050
Os.28088.1.S1_at--64--7751Chr03:32984916..32984940 (25 bp)
GGTGTGTCCAAGAAGCGATAAGCCT
LOC_Os03g58050
Os.28088.1.S1_at--310--3451Chr03:32984686..32984710 (25 bp)
CAGTATCGACTCCTTGTTTATTGCT
LOC_Os03g58050
Os.28088.1.S1_at--89--8791Chr03:32984672..32984696 (25 bp)
TGTTTATTGCTATTCTCCACTGGCT
LOC_Os03g58050
Os.28088.1.S1_at--853--9211Chr03:32984657..32984681 (25 bp)
TCCACTGGCTTCTGCCTTAATTTTG
LOC_Os03g58050
Os.28088.1.S1_at--262--171Chr03:32984638..32984662 (25 bp)
ATTTTGGATGTTGCATGCGCTGTGT
LOC_Os03g58050
Os.28088.1.S1_at--1024--9151Chr03:32984623..32984647 (25 bp)
TGCGCTGTGTATCTGGTTCATGTGA
LOC_Os03g58050
Os.28088.1.S1_at--374--3611Chr03:32984578..32984602 (25 bp)
CATTGGGATTACTTTGTGCTGCTAT
LOC_Os03g58050
Os.28088.1.S1_at--808--7931Chr03:32984573..32984597 (25 bp)
GGATTACTTTGTGCTGCTATTCTCA
LOC_Os03g58050
Os.28088.1.S1_at--597--5971Chr03:32984545..32984569 (25 bp)
GAGAACGCATTAGTCTGATATGGTA
LOC_Os03g58050
Target Sequence 
GAACCACCGTGGTCTGAGGCACTACTGGGGCCTCCGTGTGCGTGGGCAGCACACCAAGACAACCGGAAGGAGGGGTAAGA
CTGTNGGTGTGTCCAAGAAGCGATAAGCCTAAGAACCACCCGAGACTTGATGAAGCGTTTCGTTGGGTGATGTTTTGCCC
TAGGATAATATTTTGCAGCTATGGAACCTTGTCGTAATGTATCTTGAAGAGTGTCTTTGGGAACTAAGAGTAATTTACTT
TTCTTGAAACTATTGCAGTATTGACTCCTTGTTTATTGCTTTTCTCCACTTTCTTCTACCCACTTAAAACTATTGCAGTA
TCGACTCCTTGTTTATTGCTATTCTCCACTGGCTTCTGCCTTAATTTTGGATGTTGCATGCGCTGTGTATCTGGTTCATG
TGATGTACCNATGGCAGCTTNGATGCATTGGGATTACTTTGTGCTGCTATTCTCATTAGAGAACGCATTAGTCTGATATG
GTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis