Browse Element(s) Details


Os.28089.1.S1_at

Description gb:AK066606.1
DB_XREF= gi:32976624
TID=Os.28089.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acylaminoacyl-peptidase like protein (OSJNBa0032I20.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071P22, full insert sequence.
FL= gb:AK066606.1 gb:AK070876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2802010/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.2.S1_s_at11/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.1.S1_at9/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030OsAffx.11282.1.S1_at1/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28089.1.S1_at--1161--611Chr10:14208448..14208472 (25 bp)
ATGCTGTTCCTGATCCTTTCATGGA
LOC_Os10g28020
Os.28089.1.S1_at--115--7371Chr10:14208831..14208855 (25 bp)
GTGAAACTGCACCTACAACCAAGTT
LOC_Os10g28020
Os.28089.1.S1_at--625--10351NONE
TTTTTCCCACGATTCAGTCCAGATG
NONE
Os.28089.1.S1_at--532--5571Chr10:14209402..14209426 (25 bp)
GAAAGTATCTTGTGTTTATCTCAGC
LOC_Os10g28020
Os.28089.1.S1_at--188--4971Chr10:14209472..14209496 (25 bp)
GCATAAGATTGACTGGCCTGCAGAT
LOC_Os10g28020
Os.28089.1.S1_at--411--8671Chr10:14209874..14209895 (22 bp)
TGTGGTACCTATTGTGATGTGCCCT
LOC_Os10g28020
Os.28089.1.S1_at--231--6271Chr10:14209886..14209910 (25 bp)
GATGTGCCCTCAGGATGGTTGTTTT
LOC_Os10g28020
Os.28089.1.S1_at--422--7811Chr10:14209914..14209938 (25 bp)
GGTCTGTACTGCTCTGGCATACTTA
LOC_Os10g28020
Os.28089.1.S1_at--1158--3491Chr10:14210153..14210177 (25 bp)
CATGGAATGTTCTTGCACTAGACAA
LOC_Os10g28020
Os.28089.1.S1_at--487--111Chr10:14210185..14210294 (25 bp)
ATTCTTGCAGTTTCAAGCAGCCTTA
LOC_Os10g28020
Os.28089.1.S1_at--123--1511Chr10:14210285..14210309 (25 bp)
AGCAGCCTTATTACAGTTCCTCAAA
LOC_Os10g28020
Target Sequence 
ATGCTGTTCCTGATCCTTTCATGGAAGAAGCTGATAAGCCATCACTTAATGTCAGTAAGGGTGAAACTGCACCTACAACC
AAGTTAACATCAGAGTTGAGCAGTGCTTTTTTCCCACGATTCAGTCCAGATGGAAAGTATCTTGTGTTTATCTCAGCAAA
GAGTGCTATAGATAGTGGAACACACAATGCGACAAATTCAATGCATAAGATTGACTGGCCTGCAGATGGGAAATTGGAGG
GCCTCAGTGTTGCTGATGTGGTACCTATTGTGATGTGCCCTCAGGATGGTTGTTTTCCTGGTCTGTACTGCTCTGGCATA
CTTAGGAATCCATGGCTTACTGATGGACAAACTATGATTTTATCTTCTATTTGGGGAAGTAAGGAAGTAATACTTTCTGT
AAATGTTGTGAGCCGTGAAGTTTCAAGAGTTAGTCCTCAGGATTCGGATTATTCATGGAATGTTCTTGCACTAGACAAGG
ATAATATTCTTGCAGTTTCAAGCAGCCTTATTACAGTTCCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis