Browse Element(s) Details


Os.28089.1.S2_at

Description gb:AK070876.1
DB_XREF= gi:32980899
TID=Os.28089.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acylaminoacyl-peptidase like protein (OSJNBa0032I20.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072L05, full insert sequence.
FL= gb:AK066606.1 gb:AK070876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2802011/11prolyl oligopeptidase family protein, expressed
LOC_Os04g554101/11Glycerol kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.2.S1_s_at11/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.1.S1_at9/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030OsAffx.11282.1.S1_at1/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0009617biological_processresponse to bacteria
GO:0010188biological_processresponse to microbial phytotoxin
GO:0019563biological_processglycerol catabolism
GO:0042742biological_processdefense response to bacteria
GO:0004370molecular_functionglycerol kinase activity
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28089.1.S2_at--819--3271Chr10:14212830..14212854 (25 bp)
CAACACTTTTTCTCCTTGGAGCACA
LOC_Os10g28020
Os.28089.1.S2_at--1091--5931Chr10:14212848..14212872 (25 bp)
GAGCACAAGATCTCAGAGTTCCTGT
LOC_Os10g28020
Os.28089.1.S2_at--514--6051Chr10:14212863..14212887 (25 bp)
GAGTTCCTGTTTCTAATGGCTTACA
LOC_Os10g28020
Os.28089.1.S2_at--935--851Chr10:14212878..14213141 (25 bp)
ATGGCTTACAGTATGCAAGGACCTT
LOC_Os10g28020
Os.28089.1.S2_at--538--5352Chr10:14213182..14213205 (24 bp)
GAAGATATGCATGGCCTTGACAAGC
LOC_Os10g28020
Os.28089.1.S2_at--964--2111Chr10:14213305..14213329 (25 bp)
ACAGTCTGATTTTGAAAGCTTCCTC
LOC_Os10g28020
Os.28089.1.S2_at--329--9831Chr10:14213366..14213390 (25 bp)
TAAACAACATGCCTCTGTTACCACA
LOC_Os10g28020
Os.28089.1.S2_at--403--3311Chr10:14213387..14213411 (25 bp)
CACACTCTCACCTTGCTTAATAAAT
LOC_Os10g28020
Os.28089.1.S2_at--933--5331Chr10:14213608..14213632 (25 bp)
GAAGTACTTCTAGTTCACGGTTGCT
LOC_Os10g28020
Os.28089.1.S2_at--975--1911Chr10:14213624..14213648 (25 bp)
ACGGTTGCTGTCCTGTAGCCTGTTG
LOC_Os10g28020
Os.28089.1.S2_at--86--10431Chr10:14213646..14213670 (25 bp)
TTGGGCTTGGGCATTCCTTTTATTT
LOC_Os10g28020
Target Sequence 
CAACACTTTTTCTCCTTGGAGCACAAGATCTCAGAGTTCCTGTTTCTAATGGCTTACAGTATGCAAGGACCTTGAAGGAG
ATGGGAGTTGAAACCAAAATTATTGTCTTTCCAGAAGATATGCATGGCCTTGACAAGCCACAGTCTGATTTTGAAAGCTT
CCTCAATATAGGTGTTTGGTTCAAGAAGCACATGAGCAAATAAACAACATGCCTCTGTTACCACACTCTCACCTTGCTTA
ATAAATGCTTGTAATTTGGGTCAAAGCAGCCCAAGGAAACGTGGTTCNGTTGGCATTCTAATAAATTAAGCCTGCTGTAA
CATTTCTGTACTGGGATAATTCTTGAAAATGTAAATGCATTTGGTTATAAAATTTTACCCTCGTGGTACGGAACTATGGA
TTACAAATATGTGATGNTAGATTATGCTTTACTTTGAACTTTGAAGTACTTCTAGTTCACGGTTGCTGTCCTGTAGCCTG
TTGGGCTTGGGCATTCCTTTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28089.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis