Browse Element(s) Details


Os.28133.1.S1_s_at

Description gb:CB669997
DB_XREF= gi:29673722
DB_XREF=OSJNEe02N14.r
CLONE=OSJNEe02N14
TID=Os.28133.1
CNT=764
FEA=FLmRNA
TIER=Stack
STK=14
UG=Os.28133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for the small subunit of ribulose-1,5-bisphosphate carboxylase, complete cds, clone pOSSS2106
FL= gb:AK060619.1 gb:AK058875.1 gb:AK068555.1 gb:AY445627.1 gb:D00644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1939410/11Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19370OsAffx.31810.1.S1_at11/1112+11239907..11257732DNA polymerase I family protein, expressed
LOC_Os12g19394Os.28218.1.S1_x_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28218.1.S1_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_s_at10/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_x_at7/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.36903.1.S1_at1/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19420OsAffx.26050.13.S1_x_at5/1112+11283045..11283470NAD, putative
LOC_Os12g19430OsAffx.30475.9.S1_s_at8/1112+11285878..11286291ATP synthase epsilon chain, putative
LOC_Os12g19440OsAffx.7641.1.S1_at11/1112+11293171..11293621hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450Os.34295.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_x_at1/1112+11296872..11299519hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0009573cellular_componentribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28133.1.S1_s_at--295--9191Chr12:11260080..11260104 (25 bp)
TCCACCAACTCGGGCTTCGGCAACG
LOC_Os12g19394
Os.28133.1.S1_s_at--1046--4351Chr12:11260081..11260105 (25 bp)
CCACCAACTCGGGCTTCGGCAACGT
LOC_Os12g19394
Os.28133.1.S1_s_at--316--4311Chr12:11260283..11260307 (25 bp)
CCTATCGTACCTGCCACCACTCACC
LOC_Os12g19394
Os.28133.1.S1_s_at--588--3371Chr12:11260297..11260321 (25 bp)
CACCACTCACCGTGGAGGATCTTTT
LOC_Os12g19394
Os.28133.1.S1_s_at--539--1711Chr12:11260298..11260322 (25 bp)
ACCACTCACCGTGGAGGATCTTTTG
LOC_Os12g19394
Os.28133.1.S1_s_at--1157--4351Chr12:11260299..11260323 (25 bp)
CCACTCACCGTGGAGGATCTTTTGA
LOC_Os12g19394
Os.28133.1.S1_s_at--264--3331Chr12:11260300..11260324 (25 bp)
CACTCACCGTGGAGGATCTTTTGAA
LOC_Os12g19394
Os.28133.1.S1_s_at--400--2011Chr12:11260301..11260325 (25 bp)
ACTCACCGTGGAGGATCTTTTGAAG
LOC_Os12g19394
Os.28133.1.S1_s_at--1150--3731Chr12:11260302..11260326 (25 bp)
CTCACCGTGGAGGATCTTTTGAAGC
LOC_Os12g19394
Os.28133.1.S1_s_at--750--9631Chr12:11260303..11260327 (25 bp)
TCACCGTGGAGGATCTTTTGAAGCA
LOC_Os12g19394
Target Sequence 
TCCACCAACTCGGGCTTCGGCAACGTCAGCAATGGCGGAAGGATCAAGTGCATGCAGGTGTGGCCAATTGAGGGCATCAA
GAAGTTCGAGACCCTATCGTACCTGCCACCACTCACCGTGGAGGATCTTTTGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28133.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis