Browse Element(s) Details


Os.28229.2.S1_x_at

Description gb:NM_191862.1
DB_XREF= gi:34910807
GEN=P0042A10.33
TID=Os.28229.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28229 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) GDSL-motif lipasehydrolase-like protein (P0042A10.33), mRNA.
PROD=GDSL-motif lipasehydrolase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5277011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g442003/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g544702/11GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g347001/11GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os12g175701/11GDSL-motif lipase/hydrolase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52760OsAffx.2319.1.S1_at11/111+30678677..30685105expressed protein
LOC_Os01g52760Os.33039.1.S1_at10/111+30678677..30685105expressed protein
LOC_Os01g52760Os.54724.1.S1_at3/111+30678677..30685105expressed protein
LOC_Os01g52770Os.28229.2.S1_x_at11/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.28229.1.S1_at5/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.51561.1.S1_x_at1/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28229.2.S1_x_at--1154--6255Chr05:20505972..20505996 (25 bp)
GATGGGCAGCAACGACTACCTCAAC
LOC_Os05g34700
Os.28229.2.S1_x_at--28--9713Chr01:31659130..31659154 (25 bp)
TCAACAACTACTTCATGCCGGCGTT
LOC_Os01g54470
Os.28229.2.S1_x_at--773--4032Chr01:30689977..30690001 (25 bp)
CGTTCTACAACACCGGCAGCCAGTA
LOC_Os01g52770
Os.28229.2.S1_x_at--408--4491Chr01:30690043..30690067 (25 bp)
GCCGGTACGTCCAGGTGCTGTACAA
LOC_Os01g52770
Os.28229.2.S1_x_at--258--9131Chr01:30690058..30690082 (25 bp)
TGCTGTACAACTACGGCGCGCGGAA
LOC_Os01g52770
Os.28229.2.S1_x_at--1050--7211Chr01:30690216..30690240 (25 bp)
GTCGACGAGATGAACACCCTCCCGG
LOC_Os01g52770
Os.28229.2.S1_x_at--517--10511Chr01:30690255..30690279 (25 bp)
TTCATCAACGCGTACAACATCTTCA
LOC_Os01g52770
Os.28229.2.S1_x_at--853--4631Chr01:30690300..30690324 (25 bp)
GCGTCGTACGGGTTCACGGAGACCA
LOC_Os01g52770
Os.28229.2.S1_x_at--947--891Chr01:30690382..30690406 (25 bp)
AGGCGCCGTGCAGCAACAGGGACCA
LOC_Os01g52770
Os.28229.2.S1_x_at--629--2111Chr01:30690397..30690421 (25 bp)
ACAGGGACCAGCACATCTTCTGGGA
LOC_Os01g52770
Os.28229.2.S1_x_at--649--7191Chr01:30690434..30690458 (25 bp)
GTCGGAGGCGGCCAACATCATCGTC
LOC_Os01g52770
Target Sequence 
GATGGGCAGCAACGACTACCTCAACAACTACTTCATGCCGGCGTTCTACAACACCGGCAGCCAGTACACTCCCGAGCAGT
TCGCCGACTCGCTCATCGCCGACTACCGCCGGTACGTCCAGGTGCTGTACAACTACGGCGCGCGGAAGGTGGTGATGATC
GGCGTGGGGCAGGTCGGGTGCAGCCCCAACGAGCTCGCCCGGTACAGCGCCGACGGCGCCACCTGCGTGGCCCGCATCGA
CTCCGCCATCCAGATCTTCAACCGGCGTCTCGTCGGCCTCGTCGACGAGATGAACACCCTCCCGGGGGCGCACTTCACCT
TCATCAACGCGTACAACATCTTCAGCGACATCCTCGCCAACGCGGCGTCGTACGGGTTCACGGAGACCACCGCGGGGTGC
TGCGGCGTCGGGAGGAACAACGGGCAGGTGACGTGCCTGCCGTACGAGGCGCCGTGCAGCAACAGGGACCAGCACATCTT
CTGGGACGCGTTCCACCCGTCGGAGGCGGCCAACATCATCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28229.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis