Browse Element(s) Details


Os.28305.1.S1_at

Description gb:AK103700.1
DB_XREF= gi:32988909
TID=Os.28305.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.28305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136L05, full insert sequence.
FL= gb:AK103700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5611011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein
LOC_Os04g56110Os.28305.1.S1_at11/114+33199570..33202132Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.4190.1.S1_x_at11/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120Os.56111.1.S1_at9/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.29815.1.S1_x_at1/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56130OsAffx.26628.1.S1_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.26628.1.S1_x_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.29815.1.S1_x_at1/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56140Os.17447.1.S1_at11/114+33210026..33217145expressed protein
LOC_Os04g56150NANA4+33218121..33218690ethylene response factor 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28305.1.S1_at--1041--2111Chr04:33201599..33201623 (25 bp)
ACATGGAGTGCGTCGTGTCCGCCGC
LOC_Os04g56110
Os.28305.1.S1_at--45--6031Chr04:33201745..33201769 (25 bp)
GAGATGGCCATCGTCCCGCCGGTGA
LOC_Os04g56110
Os.28305.1.S1_at--649--4311Chr04:33201773..33201797 (25 bp)
CCTTCCACTACGTCATGAGCGGCGG
LOC_Os04g56110
Os.28305.1.S1_at--564--1511Chr04:33201820..33201844 (25 bp)
AGCAGCAGCACGAACCTGAGCAGCG
LOC_Os04g56110
Os.28305.1.S1_at--290--8251Chr04:33201847..33201871 (25 bp)
GGCACCACTACAGGAAGCAGCGAGG
LOC_Os04g56110
Os.28305.1.S1_at--600--2311Chr04:33201894..33201918 (25 bp)
AAAGTCCACGGACGTCATGGTTGAA
LOC_Os04g56110
Os.28305.1.S1_at--482--3971Chr04:33201906..33201930 (25 bp)
CGTCATGGTTGAATAGTCTAAGTCC
LOC_Os04g56110
Os.28305.1.S1_at--1023--1111Chr04:33201932..33201956 (25 bp)
AGTGAAAATGTTGACCCTTCTCCCT
LOC_Os04g56110
Os.28305.1.S1_at--363--731Chr04:33201939..33201963 (25 bp)
ATGTTGACCCTTCTCCCTTTGTACA
LOC_Os04g56110
Os.28305.1.S1_at--83--10351Chr04:33201997..33202021 (25 bp)
TTTATCGTCATAATGTTGTTGCAAT
LOC_Os04g56110
Os.28305.1.S1_at--71--171Chr04:33202041..33202065 (25 bp)
ATTATTTTTTACCTCTGTTTATGAG
LOC_Os04g56110
Target Sequence 
ACATGGAGTGCGTCGTGTCCGCCGCCGGCATCGGGGAAGAGGACAGGGCGAAGGCGGAGATGATGTGCAAGGTGGCGCTG
TGGTGCGTGCAGTTCCAGCCGTCGGCGCGGCNGANGATGAGCAGCGTGGTGCGGATGCTGGAGGGGGAGATGGCCATCGT
CCCGCCGGTGAACCCCTTCCACTACGTCATGAGCGGCGGCAGCGGCAGCTCGACGCTGACGAGCAGCAGCACGAACCTGA
GCAGCGGGGGCACCACTACAGGAAGCAGCGAGGTGGCGGTCAGCCTTCCTGCCNAAAAGTCCACGGACGTCATGGTTGAA
TAGTCTAAGTCCANAGTGAAAATGTTGACCCTTCTCCCTTTGTACANCGGTACCAGCGAGACNAAGATTTCGTACATATT
TTATCGTCATAATGTTGTTGCAATTATATTTGTTAATAATGTAATTATTTTTTACCTCTGTTTATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis