Browse Element(s) Details


Os.28374.1.S1_at

Description gb:CB096682
DB_XREF= gi:27920874
DB_XREF=AF53-Rpf_07_C19_T7_074.ab1
CLONE=C0002371
TID=Os.28374.1
CNT=265
FEA=FLmRNA
TIER=Stack
STK=75
UG=Os.28374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001A14, full insert sequence
FL= gb:AK064960.1 gb:AK062122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4095011/11Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40910Os.22667.1.S1_at11/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910Os.52534.1.S1_x_at5/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910OsAffx.16986.1.S1_at4/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40920Os.51645.1.S1_at11/114+24074963..24076626expressed protein
LOC_Os04g40930Os.18963.1.S1_a_at11/114+24077363..24082114DNA binding protein GT-1, putative, expressed
LOC_Os04g40940Os.6028.1.S1_at10/114+24082347..24084087Mitotic spindle checkpoint protein MAD2, putative, expressed
LOC_Os04g40950Os.28374.1.S1_at11/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40950Os.57475.1.S1_x_at1/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40960OsAffx.14225.1.S1_x_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40960OsAffx.14225.1.S1_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40970OsAffx.26412.1.S1_at11/114+24093561..24100010ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g40980Os.10104.1.S1_at11/114+24102280..24106649Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006950biological_processresponse to stress
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0008943molecular_functionglyceraldehyde-3-phosphate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28374.1.S1_at--1072--8291Chr04:24088833..24088857 (25 bp)
GGCTTTCCGTGTTCCAACCGTGGAT
LOC_Os04g40950
Os.28374.1.S1_at--226--2631Chr04:24088848..24088872 (25 bp)
AACCGTGGATGTCTCTGTCGTTGAT
LOC_Os04g40950
Os.28374.1.S1_at--150--3891Chr04:24088862..24088886 (25 bp)
CTGTCGTTGATTTGACTGTCAGGCT
LOC_Os04g40950
Os.28374.1.S1_at--441--5971Chr04:24088888..24088912 (25 bp)
GAGAAGCCAGCATCCTATGATCAGA
LOC_Os04g40950
Os.28374.1.S1_at--297--131Chr04:24088912..24089049 (25 bp)
ATTAAGGCAGCTATCAAGGAGGAGT
LOC_Os04g40950
Os.28374.1.S1_at--431--3711Chr04:24089061..24089085 (25 bp)
CTCAAGGGTATTCTGGGTTACGTTG
LOC_Os04g40950
Os.28374.1.S1_at--729--5351Chr04:24089731..24089755 (25 bp)
GAAGATGGTCACTCTTTCGGAAGAA
LOC_Os04g40950
Os.28374.1.S1_at--116--7871Chr04:24089785..24089809 (25 bp)
GGACCTTTTGCGAGCTACTCCAGTA
LOC_Os04g40950
Os.28374.1.S1_at--520--1571Chr04:24089797..24089821 (25 bp)
AGCTACTCCAGTAGAGCTTCATTAG
LOC_Os04g40950
Os.28374.1.S1_at--376--4911Chr04:24089812..24089836 (25 bp)
GCTTCATTAGCTGTATGCTGCCTTT
LOC_Os04g40950
Os.28374.1.S1_at--868--4711Chr04:24089844..24089868 (25 bp)
GCTGGCTTTTCGCATGATGTTTTAT
LOC_Os04g40950
Target Sequence 
GGCTTTCCGTGTTCCAACCGTGGATGTCTCTGTCGTTGATTTGACTGTCAGGCTTGAGAAGCCAGCATCCTATGATCAGA
TTAAGGCAGCTATCAAGGAGGAGTCTGAGGGGAAACTCAAGGGTATTCTGGGTTACGTTGAGGAGGACCTTGTTTCCACA
GACTTCCAGGGTGACAACAGGTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAAGCTTGT
GTCTTGGTATGACAACGAATGGGGATACAGCTCTCGCGTTGTTGACCTGATCCGTCACATGTACAACACCCAGTAGAAGA
TGGTCACTCTTTCGGAAGAAATGGAGTAGAGTGCTACTGAAAATAAGTCGGACCTTTTGCGAGCTACTCCAGTAGAGCTT
CATTAGCTGTATGCTGCCTTTTGTTTTTGCTGGCTTTTCGCATGATGTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis