Browse Element(s) Details


Os.28435.5.S1_x_at

Description gb:AK099678.1
DB_XREF= gi:32984887
TID=Os.28435.5
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ethylene-forming enzyme (OSJNBa0042H09.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070M10, full insert sequence.
FL= gb:AK099678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4093411/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g409601/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40859OsAffx.30740.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20138.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20140.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40880OsAffx.30741.1.S1_at11/1110+21639238..21640814oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890OsAffx.7914.1.S1_at11/1110+21642155..21647340retrotransposon protein, putative, unclassified
LOC_Os10g40900OsAffx.20137.1.S1_at11/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40900Os.13877.1.S1_at1/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40920OsAffx.6932.1.S1_at11/1110+21654252..21657630pentatricopeptide, putative, expressed
LOC_Os10g40934Os.28435.4.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.1.S1_a_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.4.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.23290.2.S1_x_at2/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40950Os.46622.1.S1_x_at11/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40950OsAffx.26978.1.S1_at1/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40960Os.23290.2.S1_s_at11/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.23290.2.S1_x_at10/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.23290.1.S1_at10/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.28435.5.S1_at1/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.28435.5.S1_x_at1/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40990Os.52326.1.S1_at11/1110+21682883..21684635Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990Os.28435.5.S1_at2/1110+21682883..21684635Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990Os.8575.1.S1_at1/1110+21682883..21684635Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g41000Os.52220.1.S1_at11/1110+21685261..21689413retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41000Os.51877.1.S1_x_at11/1110+21685261..21689413retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016491molecular_functionoxidoreductase activity
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28435.5.S1_x_at--406--3892Chr10:21660135..21660159 (25 bp)
CTGGGCAGACATGCTGTATCTTCAT
LOC_Os10g40934
Os.28435.5.S1_x_at--962--751Chr10:21660112..21660136 (25 bp)
ATGTCCATCCTAGCGATTCAAGGGA
LOC_Os10g40934
Os.28435.5.S1_x_at--826--9711Chr10:21660095..21660119 (25 bp)
TCAAGGGACCTAAGGTTCTGGCCCA
LOC_Os10g40934
Os.28435.5.S1_x_at--64--9231Chr10:21659980..21660090 (25 bp)
TCCAGCATCTTTCAGGCAATCCATT
LOC_Os10g40934
Os.28435.5.S1_x_at--640--2432Chr10:21662706..21662730 (25 bp)
AAAAGCCTGGCACTCTGCTTGTTTG
LOC_Os10g40934
Os.28435.5.S1_x_at--496--9771Chr10:21659837..21659861 (25 bp)
TAAGGATGGCCTATTACCCACCATG
LOC_Os10g40934
Os.28435.5.S1_x_at--499--5631Chr10:21659758..21659782 (25 bp)
GACACTGCTGCTCGAGATTAACAAT
LOC_Os10g40934
Os.28435.5.S1_x_at--466--2871Chr10:21659703..21659727 (25 bp)
AAGTGGTTCTCCATAGATGCTCCAA
LOC_Os10g40934
Os.28435.5.S1_x_at--1019--7331Chr10:21659675..21659699 (25 bp)
GTGCACTTATTGCTAACATTGGCGA
LOC_Os10g40934
Os.28435.5.S1_x_at--396--2513Chr10:21667124..21667148 (25 bp)
AACATTGGCGACACACTTGAGGTAA
LOC_Os10g40960
Os.28435.5.S1_x_at--460--10031Chr10:21659621..21659645 (25 bp)
TATGCTTTCACATGTCGAAGGACCT
LOC_Os10g40934
Target Sequence 
CTGGGCAGACATGCTGTATCTTCATGTCCATCCTAGCGATTCAAGGGACCTAAGGTTCTGGCCCACTTCTCCAGCATCTT
TCAGGCAATCCATTGATGCATACTCATCAGAGACTAAAAGCCTGGCACTCTGCTTGTTTGAGTTCATGGCTAAGGCTGTG
GGCGCTAAGCCAGAGTCACTTTTAGATTTATTTGAAGAGCAGCCTCGAGGCTTAAGGATGGCCTATTACCCACCATGCCG
GCAAGCTGACAAGGTGATGGGCCTTTCGCCACACTCTGATGCGGGTGGCCTGACACTGCTGCTCGAGATTAACAATGTGC
AGGGCCTGCAGATCAAGAAAGATGGCAAGTGGTTCTCCATAGATGCTCCAAATGGTGCACTTATTGCTAACATTGGCGAC
ACACTTGAGGTAATGACCAATAACAAATTATGCTTTCACATGTCGAAGGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28435.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis