Browse Element(s) Details


Os.28679.1.S1_at

Description gb:AK111216.1
DB_XREF= gi:32996425
TID=Os.28679.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1316_A04.20 (OJ1316_A04.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-179-B05, full insert sequence.
FL= gb:AK111216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4537010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein
LOC_Os07g45410OsAffx.22542.1.S1_at11/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410Os.32101.2.S1_at2/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410OsAffx.20275.1.S1_at1/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28679.1.S1_at--464--5071NONE
GCAGCTGTCCCAATAGTGTTCAAAG
NONE
Os.28679.1.S1_at--891--5931Chr07:27057811..27057835 (25 bp)
GAGCAGCTTGCTTGAGGTGTCTATA
LOC_Os07g45370
Os.28679.1.S1_at--726--8291Chr07:27057764..27057788 (25 bp)
GGCTTGCAACACCTGAATTTCACAA
LOC_Os07g45370
Os.28679.1.S1_at--686--2771Chr07:27057674..27057698 (25 bp)
AAGAGCACAGGACACCCAGGGTGAA
LOC_Os07g45370
Os.28679.1.S1_at--517--691Chr07:27057639..27057663 (25 bp)
ATGAGAAGGTTCGTCATCGAGCTCG
LOC_Os07g45370
Os.28679.1.S1_at--1011--1571Chr07:27057548..27057572 (25 bp)
AGCTCAGGAGCGTCGTCAGGTCGAC
LOC_Os07g45370
Os.28679.1.S1_at--549--7111Chr07:27057534..27057558 (25 bp)
GTCAGGTCGACGTCCGAGCTCGAGA
LOC_Os07g45370
Os.28679.1.S1_at--694--1551Chr07:27057510..27057534 (25 bp)
AGCTTCAACATGTTCTCTGGCAGCA
LOC_Os07g45370
Os.28679.1.S1_at--392--2551Chr07:27057463..27057487 (25 bp)
AACTCTGGCCTCACTTGTAGATGAT
LOC_Os07g45370
Os.28679.1.S1_at--694--9051Chr07:27057425..27057449 (25 bp)
TGCAGGCTCTGCAAGACAGTTAACA
LOC_Os07g45370
Os.28679.1.S1_at--981--3271Chr07:27057276..27057300 (25 bp)
CAAAAGGCAAGTGTATTCTCATCTC
LOC_Os07g45370
Target Sequence 
GCAGCTGTCCCAATAGTGTTCAAAGCAATTATGGTTGAGAAGAGCAGCTTGCTTGAGGTGTCTATAGGATTGGCAATACA
GNTTACAAGGCTTGCAACACCTGAATTTCACAAGGAAATCTTTGGAAAGGCAGGTGTACCAGATACAGACATTGCAGGGA
GGCTAGTGGAGATTCTGAAAGAGCACAGGACACCCAGGGTGAAGGTTCCGAGGATGAGAAGGTTCGTCATCGAGCTCGCC
ATCGCCATGATGAGAGGCGACGCCGAGCTCGTCCCCTTCTTCAGGAGCATGGAGCTGGAGAAGGAGCTCAGGAGCGTCGT
CAGGTCGACGTCCGAGCTCGAGAGCTTCAACATGTTCTCTGGCAGCATTGGGCTGAGCAGGCACAGCTCAACTCTGGCCT
CACTTGTAGATGATGCCATGGANATCATGCAGGCTCTGCAAGACAGTTAACAAATGACCACAGGACAGACTGAAAATGGT
AAATGCCTGTGATTGGTTGTATGTTGGGATATGCGATGAATCTAATTGTAAATTCAGAAATAATCTATTCAATTGATCAG
TCAAAACTGTAAATAACAAAAGGCAAGTGTATTCTCATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis