Browse Element(s) Details


Os.28823.1.S1_at

Description gb:AK111021.1
DB_XREF= gi:32996230
TID=Os.28823.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase OsGSTU4 (B1144D11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G10, full insert sequence.
FL= gb:AK111021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3775010/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37720Os.40855.2.S1_x_at8/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_x_at3/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_at1/111+21421725..21422612hypothetical protein
LOC_Os01g37740OsAffx.21224.1.S1_at11/111+21436104..21436938hypothetical protein
LOC_Os01g37740Os.51882.1.S1_at1/111+21436104..21436938hypothetical protein
LOC_Os01g37750Os.28823.1.S1_at10/111+21441604..21442638Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g37760Os.19115.1.S1_at11/111+21445766..21451610Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28823.1.S1_at--1006--9351Chr01:21441831..21441855 (25 bp)
TCGAACGCCTCATCGCGGCGGGCAA
LOC_Os01g37750
Os.28823.1.S1_at--223--5171Chr01:21441810..21441834 (25 bp)
GCAAGAAGAGGTACGCCGATCTGCA
LOC_Os01g37750
Os.28823.1.S1_at--755--4611Chr01:21441772..21441796 (25 bp)
GCGAGCGAGTGAGGTGGCCGGCCAT
LOC_Os01g37750
Os.28823.1.S1_at--507--791Chr01:21441749..21441773 (25 bp)
ATGTGTCCGTCGCTGCTCTGTTTAG
LOC_Os01g37750
Os.28823.1.S1_at--744--7231Chr01:21441741..21441765 (25 bp)
GTCGCTGCTCTGTTTAGCTGAAGAA
LOC_Os01g37750
Os.28823.1.S1_at--492--5511Chr01:21441719..21441743 (25 bp)
GAAAAGTCTGGCATATATAAACAAT
LOC_Os01g37750
Os.28823.1.S1_at--481--9831Chr01:21441695..21441719 (25 bp)
TAAATTCCGTAGAAACTGCTATGAA
LOC_Os01g37750
Os.28823.1.S1_at--1085--6611Chr01:21441657..21441681 (25 bp)
GTTGGTTTATCTACATATTTTAGTT
LOC_Os01g37750
Os.28823.1.S1_at--840--2531Chr01:21441628..21441652 (25 bp)
AACTACGTATGTACTGGGTGTTTCG
LOC_Os01g37750
Os.28823.1.S1_at--1154--7731Chr01:21441612..21441636 (25 bp)
GGTGTTTCGTTGGATCTTTGGTACG
LOC_Os01g37750
Os.28823.1.S1_at--438--6611Chr01:21441604..21441628 (25 bp)
GTTGGATCTTTGGTACGGCGTCCGT
NONE
Target Sequence 
TCGAACGCCTCATCGCGGCGGGCAAGAAGAGGTACGCCGATCTGCAGGCGGCGGCGGCGGCGAGCGAGTGAGGTGGCCGG
CCATGTGTCCGTCGCTGCTCTGTTTAGCTGAAGAAAAGTCTGGCATATATAAACAATAAATTCCGTAGAAACTGCTATGA
AAATAATGTTATTTGTTGGTTTATCTACATATTTTAGTTTTGTAACTACGTATGTACTGGGTGTTTCGTTGGATCTTTGG
TACGGCGTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis