Browse Element(s) Details


Os.2898.1.S1_at

Description gb:AY341852.1
DB_XREF= gi:33519191
TID=Os.2898.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2898 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
PROD=WRKY11
FL= gb:AY341852.1 gb:AY341848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5516411/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55130Os.26714.1.S1_at9/113+31317009..31320400expressed protein
LOC_Os03g55140Os.54730.1.S1_at10/113+31321240..31326138transducin family protein, putative, expressed
LOC_Os03g55150Os.318.1.S1_at11/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55150Os.57450.1.S1_x_at1/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55164Os.2898.1.S1_at11/113+31330339..31337999WRKY DNA binding domain containing protein, expressed
LOC_Os03g55180OsAffx.13491.1.S1_at11/113+31338223..31341263expressed protein
LOC_Os03g55189Os.50619.1.S1_at1/113+31343187..31344256NA
LOC_Os03g55189Os.50619.1.S1_x_at1/113+31343187..31344256NA
LOC_Os03g55200Os.51697.1.S1_at11/113+31349833..31352265origin recognition complex subunit 5, putative, expressed
LOC_Os03g55210OsAffx.25717.1.S1_at11/113+31353463..31356366protein kinase family protein, putative, expressed
LOC_Os03g55220Os.51847.1.S1_x_at11/113+31360998..31365561Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2898.1.S1_at--920--4551Chr03:31335984..31336008 (25 bp)
GCCCAAGATCATATTGCAGACTCGC
LOC_Os03g55164
Os.2898.1.S1_at--1045--5711Chr03:31336002..31336026 (25 bp)
GACTCGCAGCGAGGTTGATCTGCTC
LOC_Os03g55164
Os.2898.1.S1_at--877--1071Chr03:31336070..31336089 (20 bp)
AGGGCAACCCACGACCAAGGAGCTA
LOC_Os03g55164
Os.2898.1.S1_at--144--9911Chr03:31337446..31337470 (25 bp)
TACTACAAGTGCACGGCGGACGGCT
LOC_Os03g55164
Os.2898.1.S1_at--555--7531Chr03:31337624..31337648 (25 bp)
GTGGCACGGCTCATCAGCAACCGAG
LOC_Os03g55164
Os.2898.1.S1_at--1161--4691Chr03:31337648..31337672 (25 bp)
GCGGCGGCGCTCACCAGATGAAAGA
LOC_Os03g55164
Os.2898.1.S1_at--685--9811Chr03:31337697..31337721 (25 bp)
TAACACACTCCTGTGTTGCACGGAT
LOC_Os03g55164
Os.2898.1.S1_at--282--5111Chr03:31337714..31337738 (25 bp)
GCACGGATGCTTCTGTCTGGTGATC
LOC_Os03g55164
Os.2898.1.S1_at--287--9471Chr03:31337729..31337753 (25 bp)
TCTGGTGATCTCTGTGTTTTCTTTT
LOC_Os03g55164
Os.2898.1.S1_at--917--7411Chr03:31337742..31337766 (25 bp)
GTGTTTTCTTTTTCGCTGTGTGAAT
LOC_Os03g55164
Os.2898.1.S1_at--944--211Chr03:31337799..31337823 (25 bp)
ATTTGGGCAGATTTTCCTGCCGGCT
LOC_Os03g55164
Target Sequence 
GCCCAAGATCATATTGCAGACTCGCAGCGAGGTTGATCTGCTCGACGACGGCTACCGGTGGCGCAAGTACGGCCAGAAAG
TTGTCAAGGGCAACCCACGACCAAGGAGCTACTACAAGTGCACGGCGGACGGCTGCAACGTGCGGAAGCAGATCGAGAGG
GCGTCGGCCGATCCCAAGTGCGTCCTGACGACGTACACCGGCCGCCACAACCACGACCCGCCGGGGAGGCCGCCCGCCGC
CGCTAACCTTCAGATGCCTGGCCCGGCGGCCATGAGGTTGGCCGGCGGTGGCACGGCTCATCAGCAACCGAGCGGCGGCG
CTCACCAGATGAAAGAGGAGACATAGCCGGGAGGATGAATTAACACACTCCTGTGTTGCACGGATGCTTCTGTCTGGTGA
TCTCTGTGTTTTCTTTTTCGCTGTGTGAATAATAATAGAGATGAATGGTGATTGATTCTTTAATTTGGGCAGATTTTCCT
GCCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis