Browse Element(s) Details


Os.2919.1.S1_s_at

Description gb:AK103505.1
DB_XREF= gi:32988714
TID=Os.2919.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131D02, full insert sequence.
FL= gb:AK103505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0583011/11C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os05g05820OsAffx.26748.1.S1_at11/115+2894019..2896161heavy metal-associated domain containing protein, expressed
LOC_Os05g05830OsAffx.26749.1.S1_x_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830OsAffx.26749.1.S1_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.2919.1.S1_s_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.32467.1.S1_at8/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05840Os.3394.1.S1_at11/115+2906153..2909924Histidyl-tRNA synthetase, putative, expressed
LOC_Os05g05850OsAffx.14559.1.S1_at9/115+2910698..2911277hypothetical protein
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009396biological_processfolic acid and derivative biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2919.1.S1_s_at--19--1971Chr05:2905338..2905362 (25 bp)
ACTGTTCCTACCATGCACGCCGAAG
LOC_Os05g05830
Os.2919.1.S1_s_at--211--7991Chr05:2905449..2905473 (25 bp)
GGATGCATGGAGCTCCTAACACGGA
LOC_Os05g05830
Os.2919.1.S1_s_at--510--2471Chr05:2905466..2905490 (25 bp)
AACACGGAGCGGAGTTACCATCAAT
LOC_Os05g05830
Os.2919.1.S1_s_at--881--4311Chr05:2905483..2905507 (25 bp)
CCATCAATGGGAAGCGAGCGGTCGT
LOC_Os05g05830
Os.2919.1.S1_s_at--827--5051Chr05:2905516..2905540 (25 bp)
GCAGCAACATTGTCGGGCTACCTGT
LOC_Os05g05830
Os.2919.1.S1_s_at--275--10131Chr05:2905540..2905564 (25 bp)
TATCCCTGCTTCTTCTGAAGGCGGA
LOC_Os05g05830
Os.2919.1.S1_s_at--1024--5291Chr05:2905556..2905580 (25 bp)
GAAGGCGGATGCGACCGTATCCATT
LOC_Os05g05830
Os.2919.1.S1_s_at--770--2591Chr05:2905599..2905623 (25 bp)
AACCCTGAAAGTATTGTCCGTGAAG
LOC_Os05g05830
Os.2919.1.S1_s_at--251--1411Chr05:2905625..2905649 (25 bp)
AGACATTGTCATTGCAGCGGCTGGC
LOC_Os05g05830
Os.2919.1.S1_s_at--892--6611Chr05:2905786..2905810 (25 bp)
GTTGGGACGAACTCCATCAGTGACC
LOC_Os05g05830
Os.2919.1.S1_s_at--32--2331Chr05:2905973..2905997 (25 bp)
AAAGTTTCCATCTTGTATGCTGTAA
LOC_Os05g05830
Target Sequence 
ACTGTTCCTACCATGCACGCCGAAGGGATGCATGGAGCTCCTAACACGGAGCGGAGTTACCATCAATGGGAAGCGAGCGG
TCGTGGTTGGCCGCAGCAACATTGTCGGGCTACCTGTATCCCTGCTTCTTCTGAAGGCGGATGCGACCGTATCCATTGTT
CACTCCCGGACCCCAAACCCTGAAAGTATTGTCCGTGAAGCAGACATTGTCATTGCAGCGGCTGGCCAGGCTATGATGAT
CAAAGGAGACTGGATCAAACCAGGCGCTGCTGTCATCGACGTTGGGACGAACTCCATCAGTGACCCAACCAGGAAATCGG
GGTACAGACTCGTCGGCGATGTGGATTTCGCAGAGGTGAGCAAGGTTGCTGGTCACCTGACTCCAGTCCCAGGTGGCGTT
GGCCCCATGACGGTGGCGATGTTGCTGAAGAACACGGTGGATGGAGCGAAACGTGGTATAGTTCAGTAAAGTTTCCATCT
TGTATGCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2919.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis