Browse Element(s) Details


Os.29736.1.S1_at

Description gb:AK109922.1
DB_XREF= gi:32995131
TID=Os.29736.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (OSJNBa0052F07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-B12, full insert sequence.
FL= gb:AK109922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5854011/11GTP1/OBG family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58480Os.9245.1.S1_at11/113+33249349..33253870Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g58490Os.19503.1.S1_at11/113+33254765..33258653expressed protein
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein
LOC_Os03g58530Os.7181.1.S1_at11/113+33267190..33272168ES43, putative, expressed
LOC_Os03g58540Os.29736.1.S1_at11/113+33273364..33277443GTP1/OBG family protein, expressed
LOC_Os03g58560OsAffx.25755.1.S1_at11/113+33283173..33283679hypothetical protein
LOC_Os03g58570Os.44984.1.S1_at11/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58570Os.44984.2.S1_x_at10/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58580Os.11778.1.S1_a_at11/113+33298997..33301304nodulin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29736.1.S1_at--576--8391Chr03:33276788..33276812 (25 bp)
GGCGAACATAATACCTCATCAGAGA
LOC_Os03g58540
Os.29736.1.S1_at--1081--5471Chr03:33276836..33276860 (25 bp)
GAACTTCGGGACTATCCAAGACCTC
LOC_Os03g58540
Os.29736.1.S1_at--884--1371Chr03:33276854..33276878 (25 bp)
AGACCTCAAGCTGTTGTTGGTGCAA
LOC_Os03g58540
Os.29736.1.S1_at--949--7431Chr03:33276879..33277019 (25 bp)
GTGTACTGAAGCACATCGGAATCGA
LOC_Os03g58540
Os.29736.1.S1_at--411--2131Chr03:33277067..33277091 (25 bp)
ACAGGTTACCTGAGCCATGAATGGA
LOC_Os03g58540
Os.29736.1.S1_at--498--851Chr03:33277087..33277111 (25 bp)
ATGGAAGTCAGCCAGCATACCAGAG
LOC_Os03g58540
Os.29736.1.S1_at--782--9371Chr03:33277157..33277181 (25 bp)
TCGAGCTCGGCTCTTGCAAGGACAA
LOC_Os03g58540
Os.29736.1.S1_at--659--2111Chr03:33277181..33277205 (25 bp)
ACAGGGTTCCCTTGGTTTGCAGCAA
LOC_Os03g58540
Os.29736.1.S1_at--370--5591Chr03:33277332..33277356 (25 bp)
GAAATGCCAGTCAGCAGACGCGTGT
LOC_Os03g58540
Os.29736.1.S1_at--453--1231Chr03:33277371..33277395 (25 bp)
AGTTCTGTGTGTTGTTAGACCCTTT
LOC_Os03g58540
Os.29736.1.S1_at--225--6791Chr03:33277384..33277408 (25 bp)
GTTAGACCCTTTTGTGTACGATCCA
LOC_Os03g58540
Target Sequence 
GGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGT
TGTTGGTGCAAGTGTACTGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGGCAGCCCTGAGAAAATGTTTTG
ATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGCATACCAGAGGCTAGTACGAAGACCATAGACAAGTTCTCAAG
TAGCAGAGACAGATCGAGCTCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAAG
CATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGCTATTCGTTAAAAAAAATTATT
CGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGTCAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTT
GTTAGACCCTTTTGTGTACGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis