Browse Element(s) Details


Os.29800.2.S1_at

Description gb:AK067691.1
DB_XREF= gi:32977709
TID=Os.29800.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0421H07.16 (P0421H07.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119M05, full insert sequence.
FL= gb:AK109837.1 gb:AK067691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g531707/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53140Os.3433.1.S1_at11/112+32522170..32527714Ubiquitin ligase protein COP1, putative, expressed
LOC_Os02g53150Os.6228.1.S1_at11/112+32529506..32531029expressed protein
LOC_Os02g53160OsAffx.24843.1.S1_at11/112+32532070..32536217Phosphoprotein Phosphatase, putative
LOC_Os02g53170OsAffx.3052.2.S1_at10/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S1_at7/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S2_at4/112+32538231..32541177hypothetical protein
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os02g53200OsAffx.12622.1.A1_at11/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53200Os.11714.1.S1_at10/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29800.2.S1_at--1144--9271Chr01:29473857..29473881 (25 bp)
TCCGCAACGAGGATGGGTTCACCAC
NONE
Os.29800.2.S1_at--344--1673Chr01:29474215..29474239 (25 bp)
AGCCCTGTGAGCTTTGGCCCAGAGA
NONE
Os.29800.2.S1_at--897--2193Chr01:29474241..29474265 (25 bp)
ACAACAAAACACACGCGAGGTCACA
NONE
Os.29800.2.S1_at--299--4073Chr01:29474256..29474280 (25 bp)
CGAGGTCACACACGCACGAAGGAAT
NONE
Os.29800.2.S1_at--1136--7392Chr01:29474287..29474311 (25 bp)
GTGATGCAAATACTTCAGTGGACAA
NONE
Os.29800.2.S1_at--1014--5612Chr01:29474307..29474331 (25 bp)
GACAAACACGAGCTTGCGGCGAACT
NONE
Os.29800.2.S1_at--865--10693Chr01:29474320..29474344 (25 bp)
TTGCGGCGAACTAGCTACACTTCCA
NONE
Os.29800.2.S1_at--861--9853Chr01:29474335..29474359 (25 bp)
TACACTTCCACTCTTATTTCTCAGA
NONE
Os.29800.2.S1_at--331--10213Chr01:29474349..29474373 (25 bp)
TATTTCTCAGACTCAGTGATTTGTT
NONE
Os.29800.2.S1_at--653--1113Chr09:8957542..8957561 (20 bp)
AGTGATTTGTTAGTCAAGCTGCAAC
NONE
Os.29800.2.S1_at--681--2591Chr01:29474378..29474402 (25 bp)
AAGCTGCAACACATACAGTTACCGA
NONE
Target Sequence 
TCCGCAACGAGGATGGGTTCACCACGGAGGACGTCGTGGCCATGGACTCCCCCAACATCGTCGCCCTCGCTGAGACGCCG
ACGGCAAGNACATCGCCGCCGCCGCCGCTGCCGACCACCTCAAGGCCATCTGAGCGAGCTAGCTGCTCTCCTCAAGGCCA
TCCGTGCAGCGCCGGCGAGCCGCCCGGAGATCCTTGGCGTCGAGGCGGCCGCGGCGGAGACAGCTTCCCGCTCCCCCTGC
CGCCGCGGCTCCTTGTGGTGCTCGGTGGCGTACGCTTGCGGGTGAAGGTGGCAGAGCAGCATCCCGGACGTGTCCGCCTC
CACCCTGGCCGACAGCTGCCTCAACCGCGACTCCACCCAGCCCTGTGAGCTTTGGCCCAGAGAAACAACAAAACACACGC
GAGGTCACACACGCACGAAGGAATACACAAGTGATGCAAATACTTCAGTGGACAAACACGAGCTTGCGGCGAACTAGCTA
CACTTCCACTCTTATTTCTCAGACTCAGTGATTTGTTAGTCAAGCTGCAACACATACAGTTACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29800.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis