Browse Element(s) Details


Os.29856.2.S1_x_at

Description gb:NM_191954.1
DB_XREF= gi:34910991
GEN=OJ1125_C04.1
TID=Os.29856.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.29856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1125_C04.1 (OJ1125_C04.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1125_C04.1 (OJ1125_C04.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g140604/11expressed protein
LOC_Os01g480302/11expressed protein
LOC_Os07g406701/11hypothetical protein
LOC_Os09g202101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14010Os.17018.1.S1_at11/1111+7772111..7779644PHD finger protein, putative, expressed
LOC_Os11g14020OsAffx.30968.1.S1_at11/1111+7781949..7783802transposon protein, putative, unclassified
LOC_Os11g14030OsAffx.18841.1.S1_at11/1111+7784619..7785586hypothetical protein
LOC_Os11g14040OsAffx.18842.1.S1_at11/1111+7787757..7789994Glutathione S-transferase zeta class, putative
LOC_Os11g14050OsAffx.30969.1.S1_at11/1111+7792536..7797853Protein kinase domain containing protein, expressed
LOC_Os11g14060Os.50314.1.S1_at8/1111+7799964..7801520expressed protein
LOC_Os11g14060Os.29856.2.S1_x_at4/1111+7799964..7801520expressed protein
LOC_Os11g14070Os.51705.1.S1_at11/1111+7813470..7819529expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29856.2.S1_x_at--240--8491Chr01:27818669..27818693 (25 bp)
TGGCTCGCCGTGTTGGAACGCGGAA
LOC_Os01g48030
Os.29856.2.S1_x_at--679--6951Chr01:27818722..27818746 (25 bp)
GTAGCAGGCCACGAGCGGAGCGGAA
LOC_Os01g48030
Os.29856.2.S1_x_at--1003--7571NONE
GGGCTCTGTAGCACTGCCCCGTGCT
NONE
Os.29856.2.S1_x_at--1013--672Chr01:27819050..27819074 (25 bp)
ATGACCCAGCGCTGTCGAAGTGGAG
NONE
Os.29856.2.S1_x_at--562--2874Chr09:12118463..12118897 (25 bp)
AAGTGGAGCACCAGCCGCGGCACGT
NONE
Os.29856.2.S1_x_at--1062--4191Chr01:27819112..27819136 (25 bp)
CCCGCGAAGCAGAGGCTGAGGCCAA
NONE
Os.29856.2.S1_x_at--406--971Chr01:27819177..27819201 (25 bp)
AGGAGCGCCAGCACAGAGGCCGCCT
NONE
Os.29856.2.S1_x_at--325--611Chr01:27819206..27819230 (25 bp)
ATGCGCGAGCAGGAGTTGCAGCCAT
NONE
Os.29856.2.S1_x_at--884--1511Chr01:27819213..27819237 (25 bp)
AGCAGGAGTTGCAGCCATCGTTGGT
NONE
Os.29856.2.S1_x_at--1080--7536Chr09:16751141..16751164 (24 bp)
GTGGCTGCTTCATCCCGAACCGGAT
NONE
Os.29856.2.S1_x_at--54--9313Chr01:27819279..27819299 (21 bp)
TCCCGAACCGGATGGCTGCAGAAAG
NONE
Target Sequence 
TGGCTCGCCGTGTTGGAACGCGGAAGGGCGGGCGGAGTAGCGGGGCGACGACGGTAGCAGGCCACGAGCGGAGCGGAAGC
GGCGGCCGAGGTCGAGGCCGAAGACGTGTGGTGCGGTGTACAGCGGGAGGCGGCGTGACCACGGGGGACGAAGCCGGTGG
TGGTCGCCAAGGAGGAGCCCTGCGGCGTCGTCGTCTTCGGCGGCGGCGCGTGTACGGCGAGGAGCGGGGCTCTGTAGCAC
TGCCCCGTGCTCGAGCTCTGCTACTCCATGACCCAGCGCTGTCGAAGTGGAGCACCAGCCGCGGCACGTCCACGGCCTAC
GGCGCGGCCCCCGCGAAGCAGAGGCTGAGGCCAAGGGCAGCCGAACGCGCGCAGGAGGAGCGCCAGCACAGAGGCCGCCT
CGGCATGCGCGAGCAGGAGTTGCAGCCATCGTTGGTGGAGTCGGGGCGGACGATGTCGGCGGCGCGTGGCTGCTTCATCC
CGAACCGGATGGCTGCAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29856.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis