Browse Element(s) Details


Os.29878.1.S1_at

Description gb:AK109718.1
DB_XREF= gi:32994927
TID=Os.29878.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684E06.19 (P0684E06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-A02, full insert sequence.
FL= gb:AK109718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4704011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47000Os.35344.3.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000Os.35344.18.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000OsAffx.22940.5.S1_x_at2/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47010OsAffx.820.1.S1_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.820.1.S1_x_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.23695.1.S1_at9/111+27172837..27173998hypothetical protein
LOC_Os01g47020NANA1+27177191..27180428transposon protein, putative, unclassified
LOC_Os01g47030NANA1+27181058..27187216transposon protein, putative, unclassified
LOC_Os01g47040Os.29878.1.S1_at11/111+27188929..27190282C2 domain containing protein, expressed
LOC_Os01g47050Os.41468.1.S1_at11/111+27199065..27201881F-box family protein, putative, expressed
LOC_Os01g47060NANA1+27204457..27206125expressed protein
LOC_Os01g47070Os.171.1.S1_at11/111+27212345..27213567Acidic endochitinase precursor, putative, expressed
LOC_Os01g47080Os.41467.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47080Os.6058.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29878.1.S1_at--937--5031Chr01:27189693..27189717 (25 bp)
GCAGATTGCAGCCAAGCCGAACAAG
LOC_Os01g47040
Os.29878.1.S1_at--383--10711Chr01:27189822..27189846 (25 bp)
TTGCGGGCCTTGTATCCTACCATTA
LOC_Os01g47040
Os.29878.1.S1_at--130--1431Chr01:27189850..27189874 (25 bp)
AGAAAGATCCACATAAGCCCCTCTG
LOC_Os01g47040
Os.29878.1.S1_at--528--5771Chr01:27189874..27189898 (25 bp)
GACGAGAACCTGCAGGCCTTTGCTA
LOC_Os01g47040
Os.29878.1.S1_at--1141--9471Chr01:27189905..27189929 (25 bp)
TCTCCGGCGGAGTTGGCATTACCAG
LOC_Os01g47040
Os.29878.1.S1_at--1026--10071Chr01:27189966..27189990 (25 bp)
TAGGTTCGGTTCTTTCAGTTGATTC
LOC_Os01g47040
Os.29878.1.S1_at--990--71Chr01:27189987..27190011 (25 bp)
ATTCCTTGTGGAGATAGCCTGTTTC
LOC_Os01g47040
Os.29878.1.S1_at--526--9991Chr01:27190001..27190025 (25 bp)
TAGCCTGTTTCTTCTTGTTGTGGAA
LOC_Os01g47040
Os.29878.1.S1_at--873--6771Chr01:27190083..27190107 (25 bp)
GTTACTGCAAATATGTCTCACTGAT
LOC_Os01g47040
Os.29878.1.S1_at--161--311Chr01:27190157..27190181 (25 bp)
ATAGCGCGGAATCATTTTGTTATCT
LOC_Os01g47040
Os.29878.1.S1_at--931--4451Chr01:27190238..27190262 (25 bp)
GCCTGAATGCCTGAGTATTTCCACT
LOC_Os01g47040
Target Sequence 
GCAGATTGCAGCCAAGCCGAACAAGAAGTGCGCTGACAAGCTGGACGTTGCGGTGAAGCTGAACAATGGCGCAGATGATC
GGAGCGATGAGGAGCGTGAGGAGTTGAGAGAGATGGGCGGGGTGGTGTTTTGCGGGCCTTGTATCCTACCATTACCAAGA
AAGATCCACATAAGCCCCTCTGACGAGAACCTGCAGGCCTTTGCTAGCATCTTCTCCGGCGGAGTTGGCATTACCAGACA
GAGCCCTCGCCATTGAGGAGTCCAGGCATTTAATAGGTTCGGTTCTTTCAGTTGATTCCTTGTGGAGATAGCCTGTTTCT
TCTTGTTGTGGAAAATTAGTTTCTTAACCATGAGGATATAGTGCTGAGTTGTATTATAGCATCTATTGTTGTTACTGCAA
ATATGTCTCACTGATTCTTTTTTGTGTGAATCAATGGAATTATAGATTTATAGTGCCACAATGAATAGCGCGGAATCATT
TTGTTATCTGCTATGCTCAAAGAACCTCAATTTAAGGTTTGAAGATTTCGTTTGAAGCAATATAAGCCTGAATGCCTGAG
TATTTCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis