Browse Element(s) Details


Os.29966.1.S1_at

Description gb:AK109594.1
DB_XREF= gi:32994803
TID=Os.29966.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0018C10.43 (P0018C10.43), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C09, full insert sequence.
FL= gb:AK109594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g102702/11hypothetical protein
LOC_Os12g069601/11transposon protein, putative, unclassified
LOC_Os06g279201/11Quinone oxidoreductase, putative
LOC_Os10g418291/11F-box domain containing protein
LOC_Os08g072001/11Cytokinin-O-glucosyltransferase 2, putative
LOC_Os06g375301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10230NANA1+5381041..5381619hypothetical protein
LOC_Os01g10240OsAffx.10993.1.S1_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.1.S1_x_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.2.S1_x_at1/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10250Os.9487.1.S1_a_at11/111+5386541..5391214hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g10260OsAffx.22146.1.S1_x_at11/111+5398203..5398817expressed protein
LOC_Os01g10270Os.29966.1.S1_at2/111+5400104..5401369hypothetical protein
LOC_Os01g10280Os.14917.2.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.2.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10290Os.27665.1.S1_at11/111+5410397..5413668Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os01g10300OsAffx.23184.1.S1_at11/111+5413986..5415547expressed protein
LOC_Os01g10310OsAffx.1977.1.S1_x_at10/111+5420861..5421373hypothetical protein
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0008270molecular_functionzinc ion binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29966.1.S1_at--838--3291Chr01:38601345..38601369 (25 bp)
CACAGTGGTGGATAGTGCAGTCACG
NONE
Os.29966.1.S1_at--688--10071Chr01:38601357..38601381 (25 bp)
TAGTGCAGTCACGAGGCCGAGGGTG
NONE
Os.29966.1.S1_at--645--1051Chr01:38601376..38601400 (25 bp)
AGGGTGGCGAGGACACGGCCATTCT
NONE
Os.29966.1.S1_at--176--5631Chr01:38601387..38601411 (25 bp)
GACACGGCCATTCTCGTGGCCCGTT
NONE
Os.29966.1.S1_at--1050--1774Chr04:1935159..1935182 (24 bp)
ACCGTCCCACACTCGCGGAGAGAAA
NONE
Os.29966.1.S1_at--344--5231Chr01:38601574..38601598 (25 bp)
GAATATGATTTATGTGAGCCCCACA
NONE
Os.29966.1.S1_at--1095--711Chr01:38601578..38601602 (25 bp)
ATGATTTATGTGAGCCCCACATGAC
NONE
Os.29966.1.S1_at--713--18713Chr08:26000743..26000766 (24 bp)
ACAGTGGGTCCCACCCATACTTTTG
NONE
Os.29966.1.S1_at--770--86314Chr08:26000746..26000769 (24 bp)
TGGGTCCCACCCATACTTTTGGTGA
NONE
Os.29966.1.S1_at--1022--7238Chr06:5653562..5653586 (25 bp)
GTCCCACCCATACTTTTGGTGAATG
NONE
Os.29966.1.S1_at--1058--92553Chr12:3395849..3395869 (21 bp)
TTTGGTGAATGACAAATGGGTCCCA
LOC_Os12g06960
Target Sequence 
CACAGTGGTGGATAGTGCAGTCACGAGGCCGAGGGTGGCGAGGACACGGCCATTCTCGTGGCCCGTTTTCTTCCTTCCGA
CGGCCAACCTTCCACGGCGGGCTCGATCTCCGCCGCCGCCGCCGCTCCGGCCCTCGCCCGCATGCCGCCGTCACCGCTCC
AGTGCCACTCCCAGGACTCCGCCGCCGCTGGCCACCGTCCCACACTCGCGGAGAGAAAGAGAGAGGGGAGAATATGATTT
ATGTGAGCCCCACATGACAGTGGGTCCCACCCATACTTTTGGTGAATGACAAATGGGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis