Browse Element(s) Details


Os.29966.1.S1_x_at

Description gb:AK109594.1
DB_XREF= gi:32994803
TID=Os.29966.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0018C10.43 (P0018C10.43), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C09, full insert sequence.
FL= gb:AK109594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g414202/11hypothetical protein
LOC_Os08g072001/11Cytokinin-O-glucosyltransferase 2, putative
LOC_Os06g279201/11Quinone oxidoreductase, putative
LOC_Os10g418291/11F-box domain containing protein
LOC_Os12g069601/11transposon protein, putative, unclassified
LOC_Os06g375301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed
LOC_Os07g41380Os.53737.1.S1_at2/117+24793442..24797855retrotransposon protein, putative, unclassified
LOC_Os07g41390OsAffx.5593.1.S1_at9/117+24798837..24802371hypothetical protein
LOC_Os07g41400NANA7+24803996..24804217hypothetical protein
LOC_Os07g41410Os.10373.1.S1_at11/117+24807955..24808672expressed protein
LOC_Os07g41420Os.29966.2.S1_x_at3/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420Os.29966.1.S1_x_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_x_at1/117+24812788..24813900hypothetical protein
LOC_Os07g41430Os.41695.15.S1_s_at11/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.2.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.3.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.5.S1_x_at9/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.4.S1_x_at1/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41439NANA7+24830995..24831751hypothetical protein
LOC_Os07g41448NANA7+24836755..24837511hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0008270molecular_functionzinc ion binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29966.1.S1_x_at--517--2551Chr01:38601073..38601097 (25 bp)
AACTCGCGTGTGGTTGCGTCGTTGT
NONE
Os.29966.1.S1_x_at--590--9351Chr01:38601187..38601211 (25 bp)
TCGCAAGTGCAGGAGAAGCCGCCGC
NONE
Os.29966.1.S1_x_at--808--7532Chr01:38601253..38601277 (25 bp)
GTGGCGAGACGCAAGCGGCCCTTAC
NONE
Os.29966.1.S1_x_at--100--3253Chr04:1934736..1934905 (25 bp)
CAAGCGGCCCTTACGCGTTCGTGGG
NONE
Os.29966.1.S1_x_at--645--2131Chr01:38601346..38601370 (25 bp)
ACAGTGGTGGATAGTGCAGTCACGA
NONE
Os.29966.1.S1_x_at--455--6191Chr01:38601384..38601408 (25 bp)
GAGGACACGGCCATTCTCGTGGCCC
NONE
Os.29966.1.S1_x_at--1051--1774Chr04:1935159..1935182 (24 bp)
ACCGTCCCACACTCGCGGAGAGAAA
NONE
Os.29966.1.S1_x_at--343--5231Chr01:38601574..38601598 (25 bp)
GAATATGATTTATGTGAGCCCCACA
NONE
Os.29966.1.S1_x_at--1094--711Chr01:38601578..38601602 (25 bp)
ATGATTTATGTGAGCCCCACATGAC
NONE
Os.29966.1.S1_x_at--771--7798Chr06:5653561..5653585 (25 bp)
GGTCCCACCCATACTTTTGGTGAAT
NONE
Os.29966.1.S1_x_at--1057--92553Chr12:3395849..3395869 (21 bp)
TTTGGTGAATGACAAATGGGTCCCA
LOC_Os12g06960
Target Sequence 
AACTCGCGTGTGGTTGCGTCGTTGTCGGCTGGCTCAGCACGCCGACCGCGTCCATCGGCGGCGGCGGCGCCTCCCCCGCC
CGCGCCGCTCCTCCCGCCTTCAACGCCGCCGCCGTCGCAAGTGCAGGAGAAGCCGCCGCCGGATGCTGCCATCTTCGAGG
GGATGCCGACGCGAGTCGCGGTGGCGAGACGCAAGCGGCCCTTACGCGTTCGTGGGCGCGGCGGGAGAACGGCGGAGGCG
GGTGCGTCGTGGCCGGCAGAGAGGGCGTGGAGCACAGTGGTGGATAGTGCAGTCACGAGGCCGAGGGTGGCGAGGACACG
GCCATTCTCGTGGCCCGTTTTCTTCCTTCCGACGGCCAACCTTCCACGGCGGGCTCGATCTCCGCCGCCGCCGCCGCTCC
GGCCCTCGCCCGCATGCCGCCGTCACCGCTCCAGTGCCACTCCCAGGACTCCGCCGCCGCTGGCCACCGTCCCACACTCG
CGGAGAGAAAGAGAGAGGGGAGAATATGATTTATGTGAGCCCCACATGACAGTGGGTCCCACCCATACTTTTGGTGAATG
ACAAATGGGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29966.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis