Browse Element(s) Details


Os.29966.2.S1_x_at

Description gb:NM_190174.1
DB_XREF= gi:34907431
GEN=P0018C10.43
TID=Os.29966.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.29966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0018C10.43 (P0018C10.43), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0018C10.43 (P0018C10.43), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g414203/11hypothetical protein
LOC_Os06g375301/11hypothetical protein
LOC_Os10g205001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed
LOC_Os07g41380Os.53737.1.S1_at2/117+24793442..24797855retrotransposon protein, putative, unclassified
LOC_Os07g41390OsAffx.5593.1.S1_at9/117+24798837..24802371hypothetical protein
LOC_Os07g41400NANA7+24803996..24804217hypothetical protein
LOC_Os07g41410Os.10373.1.S1_at11/117+24807955..24808672expressed protein
LOC_Os07g41420Os.29966.2.S1_x_at3/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420Os.29966.1.S1_x_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_x_at1/117+24812788..24813900hypothetical protein
LOC_Os07g41430Os.41695.15.S1_s_at11/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.2.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.3.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.5.S1_x_at9/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.4.S1_x_at1/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41439NANA7+24830995..24831751hypothetical protein
LOC_Os07g41448NANA7+24836755..24837511hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29966.2.S1_x_at--474--9351Chr01:38600659..38600683 (25 bp)
TCGCAGCAGATATACCCCATGGTGA
NONE
Os.29966.2.S1_x_at--793--9952Chr01:38600671..38600695 (25 bp)
TACCCCATGGTGAACGAAGACGCGC
NONE
Os.29966.2.S1_x_at--496--2771Chr01:38600687..38600711 (25 bp)
AAGACGCGCAGTACGGCGACGAGCT
NONE
Os.29966.2.S1_x_at--1155--7632Chr01:38600777..38600801 (25 bp)
GGGAGCTCGACAGCCAGTGCTACGT
NONE
Os.29966.2.S1_x_at--1133--7312Chr01:38600793..38600817 (25 bp)
GTGCTACGTACAGGAACGTGCTCGC
NONE
Os.29966.2.S1_x_at--1131--73Chr10:21737072..21737096 (25 bp)
ATTGCCTCGGCAACCAGCAGGAGAA
NONE
Os.29966.2.S1_x_at--516--2551Chr01:38601073..38601097 (25 bp)
AACTCGCGTGTGGTTGCGTCGTTGT
NONE
Os.29966.2.S1_x_at--589--9351Chr01:38601187..38601211 (25 bp)
TCGCAAGTGCAGGAGAAGCCGCCGC
NONE
Os.29966.2.S1_x_at--1138--4335Chr01:38601681..38601705 (25 bp)
CCATGTCAACGCCACGTGGACAGAA
NONE
Os.29966.2.S1_x_at--776--5816Chr08:26000846..26000975 (25 bp)
GACCGAGTCAATACTGCCACGTAAG
NONE
Os.29966.2.S1_x_at--1159--7051Chr01:38601726..38601750 (25 bp)
GTAAGCACCACATCAACACCACGTG
NONE
Target Sequence 
TCGCAGCAGATATACCCCATGGTGAACGAAGACGCGCAGTACGGCGACGAGCTCCGGGCCGTGTGCCCGCCGGATGCGGA
GGAGACGGCGTGGGTGCACCTGGACCACGGCACGCCGGGGGAGCTCGACAGCCAGTGCTACGTACAGGAACGTGCTCGCC
GGGAAGCCGCAGTCCAGCCAGTCCTCATCTGTCGCCCCTTGCCGATTGCCTCGGCAACCAGCAGGAGAATGCTCAACGCA
GATGCCTCCCAACTCGCGTGTGGTTGCGTCGTTGTCGGCTGGCTCAGCACGCCGACCGCGTCCATCGGCGGCGGCGGCGC
CTCCCCCGCCCGCGCCGCTCCTCCCGCCTTCAACGCCGCCGCCGTCGCAAGTGCAGGAGAAGCCGCCGCCGGATGCTGCC
ATCTTCGAGGGGATGCCGACGCGAGTCGCGGTGGCGAGACGCAAGCGGCCCTTACGCGTTCGTGGGCGCGGCGGGAGAAC
GGCGGAGGCGGCGCCATGTCAACGCCACGTGGACAGAAGACCGAGTCAATACTGCCACGTAAGCACCACATCAACACCAC
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29966.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis