Browse Element(s) Details

Os.29987.2.S1_at

Description

gb:AK109568.1
DB_XREF= gi:32994777
TID=Os.29987.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-E04, full insert sequence.
FL= gb:AK109568.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g50610	11/11	retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g50550	Os.18305.1.S2_at	11/11	5	+	28901377..28904741	Polyprenyl synthetase family protein, expressed
LOC_Os05g50550	Os.18305.1.S1_at	11/11	5	+	28901377..28904741	Polyprenyl synthetase family protein, expressed
LOC_Os05g50560	Os.52787.1.S1_at	7/11	5	+	28906389..28912094	mitogen-activated protein kinase, putative, expressed
LOC_Os05g50570	Os.53101.1.S1_at	10/11	5	+	28912701..28914261	Serine carboxypeptidase family protein, expressed
LOC_Os05g50580	Os.56284.1.S1_at	11/11	5	+	28916940..28918772	Serine carboxypeptidase family protein, expressed
LOC_Os05g50590	OsAffx.15183.1.S1_at	10/11	5	+	28918822..28919562	hypothetical protein
LOC_Os05g50600	Os.27648.1.S1_at	11/11	5	+	28920855..28922556	Serine carboxypeptidase family protein, expressed
LOC_Os05g50600	Os.45963.1.S1_x_at	1/11	5	+	28920855..28922556	Serine carboxypeptidase family protein, expressed
LOC_Os05g50610	Os.29987.2.S1_at	11/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.29987.1.S1_at	11/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.43567.1.S1_x_at	5/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.53217.1.S1_x_at	4/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.38172.1.S1_x_at	2/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50624	Os.51355.1.S1_at	11/11	5	+	28938490..28940826	hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624	Os.7726.1.S1_at	9/11	5	+	28938490..28940826	hAT family dimerisation domain containing protein, expressed
LOC_Os05g50640	Os.54158.1.S1_at	11/11	5	+	28945595..28949500	hAT family dimerisation domain containing protein, expressed
LOC_Os05g50650	Os.36306.2.S1_x_at	2/11	5	+	28950692..28952249	retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.29987.2.S1_at--147--423	1	Chr05:28928089..28928113 (25 bp)	CCGCTCGGGTGCGAATGACGATGAA	LOC_Os05g50610
Os.29987.2.S1_at--339--121	1	Chr05:28928044..28928068 (25 bp)	AGTTAGGCTTCGTGCCGAGCATACA	LOC_Os05g50610
Os.29987.2.S1_at--1059--1053	1	Chr05:28927987..28928011 (25 bp)	TTCATCTCTACACCGCGCAGCAAGA	LOC_Os05g50610
Os.29987.2.S1_at--797--375	1	Chr05:28927961..28927985 (25 bp)	CTCTTCCTTCCGTGACAGGCAGTCA	LOC_Os05g50610
Os.29987.2.S1_at--885--91	1	Chr05:28927945..28927969 (25 bp)	AGGCAGTCACCACGGCTATTGATAT	LOC_Os05g50610
Os.29987.2.S1_at--290--641	1	Chr05:28927918..28927942 (25 bp)	GATCTTTCTTATTTACGGTTTACAG	LOC_Os05g50610
Os.29987.2.S1_at--776--379	1	Chr05:28927882..28927906 (25 bp)	CTCGAGATAAATTTGTGCGCGGCTA	LOC_Os05g50610
Os.29987.2.S1_at--705--675	1	Chr05:28927847..28927871 (25 bp)	GTTACGTTACCGATGACCAAGTGAA	LOC_Os05g50610
Os.29987.2.S1_at--1115--249	1	Chr05:28927775..28927799 (25 bp)	AACATGTTTGTTTGAGTTGCATTGC	LOC_Os05g50610
Os.29987.2.S1_at--1143--665	1	Chr05:28927760..28927784 (25 bp)	GTTGCATTGCTAAGTGCCTAGCTAG	LOC_Os05g50610
Os.29987.2.S1_at--107--241	1	Chr05:28927729..28927753 (25 bp)	AAACACTGTCTTTAATTCCAAACTG	LOC_Os05g50610

Target Sequence

CCGCTCGGGTGCGAATGACGATGAACCAGCAGCAGCAGCAGCAGCAGTTAGGCTTCGTGCCGAGCATACACGCCGCCGCC
GCCCGGCCGACGATGCCTCCTCTTCATCTCTACACCGCGCAGCAAGACCTCTTCCTTCCGTGACAGGCAGTCACCACGGC
TATTGATATTAGATCTTTCTTATTTACGGTTTACAGAATGCATGCTGCTCGAGATAAATTTGTGCGCGGCTATATATATA
TGGTTACGTTACCGATGACCAAGTGAAGTGTGGGATGCATGTTTTGTGTCCTCGTTTTTTTGGTTGGTCTACAAAACATG
TTTGTTTGAGTTGCATTGCTAAGTGCCTAGCTAGCTATATAAACACTGTCTTTAATTCCAAACTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis