Browse Element(s) Details


Os.30306.1.A1_at

Description gb:AK109010.1
DB_XREF= gi:32994219
TID=Os.30306.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-H10, full insert sequence.
FL= gb:AK109010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3953011/11Cupin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed
LOC_Os09g39540Os.37329.1.S1_at9/119+22701259..2270262340S ribosomal protein S25, putative, expressed
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein
LOC_Os09g39560Os.7132.1.S1_at11/119+22707156..22709078Genetic modifier, putative, expressed
LOC_Os09g39570Os.5640.1.S1_at11/119+22712810..22716059Beta-amylase, putative, expressed
LOC_Os09g39580Os.52848.1.S1_at11/119+22716267..22719449expressed protein
LOC_Os09g39590Os.49318.1.S1_at11/119+22719823..22727019Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30306.1.A1_at--185--1791Chr09:22699826..22699850 (25 bp)
ACCGTGTTCGGCACAAACATCGACG
LOC_Os09g39530
Os.30306.1.A1_at--1054--7411Chr09:22699823..22699847 (25 bp)
GTGTTCGGCACAAACATCGACGACG
LOC_Os09g39530
Os.30306.1.A1_at--841--4991Chr09:22699745..22699769 (25 bp)
GCAGGCCTAACTCCTCCCAAGAAAG
LOC_Os09g39530
Os.30306.1.A1_at--242--5371Chr09:22699564..22699588 (25 bp)
GAAGAGCTTTGAACCATGTATCTAT
LOC_Os09g39530
Os.30306.1.A1_at--644--5431Chr09:22699554..22699578 (25 bp)
GAACCATGTATCTATCAGTATTAAT
LOC_Os09g39530
Os.30306.1.A1_at--119--411Chr09:22699541..22699565 (25 bp)
ATCAGTATTAATTAAGGCGTTGTGG
LOC_Os09g39530
Os.30306.1.A1_at--78--10171Chr09:22699509..22699533 (25 bp)
TATAGACCAGTTCAGTTGTAAGTGT
LOC_Os09g39530
Os.30306.1.A1_at--692--7411Chr09:22699488..22699512 (25 bp)
GTGTTGAGAGTTTCTCTGCTGTAAC
LOC_Os09g39530
Os.30306.1.A1_at--679--3771Chr09:22699473..22699497 (25 bp)
CTGCTGTAACGGCTTTCCACAATAA
LOC_Os09g39530
Os.30306.1.A1_at--191--8311Chr09:22699463..22699487 (25 bp)
GGCTTTCCACAATAATGATACATCT
LOC_Os09g39530
Os.30306.1.A1_at--822--8831Chr09:22699448..22699472 (25 bp)
TGATACATCTCTTAATACTGTGTGT
LOC_Os09g39530
Target Sequence 
ACCGTGTTCGGCACAAACATCGACGACGCCGTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAA
GGCAGGCCTAACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCCNGCTGCTGCT
GCTGCTTGAAATAAGAGACNTTCCAGGCTACCAACTACTGAAGAAGGTAAATTATGATTTGTGTGGTGAATAATTNTGAA
TTGTGGTTGTATTGTCTNGTNTGAAGAGCTTTGAACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGNAATATATAT
AGACCAGTTCAGTTGTAAGTGTTGAGAGTTTCTCTGCTGTAACGGCTTTCCACAATAATGATACATCTCTTAATACTGTG
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30306.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis