Browse Element(s) Details


Os.30608.1.S1_at

Description gb:AK059045.1
DB_XREF= gi:32969063
TID=Os.30608.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D08, full insert sequence.
FL= gb:AK059045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g101806/11CMV 1a interacting protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10149Os.55619.1.S1_at11/1110+5334899..5335998expressed protein
LOC_Os10g10160OsAffx.6631.1.S1_at11/1110+5336964..5340250hypothetical protein
LOC_Os10g10170Os.19627.1.S1_a_at11/1110+5343540..5351016pentatricopeptide, putative, expressed
LOC_Os10g10180Os.8014.2.S1_x_at11/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.8014.1.S1_at10/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_at6/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_x_at5/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10190Os.50827.1.S1_x_at11/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.46916.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.11220.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10200OsAffx.8420.1.S1_x_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.8420.1.S1_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.22927.2.S1_x_at1/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.4.S1_x_at2/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.3.S1_x_at1/1110+5384615..5388949transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30608.1.S1_at--1083--2411NONE
AAAAAAGGCCATGGCCTACTGGCAT
NONE
Os.30608.1.S1_at--298--2311NONE
AAAGGCCATGGCCTACTGGCATGCT
NONE
Os.30608.1.S1_at--981--2951NONE
AAGGCCATGGCCTACTGGCATGCTG
NONE
Os.30608.1.S1_at--1069--871NONE
AGGCCATGGCCTACTGGCATGCTGG
NONE
Os.30608.1.S1_at--299--4431NONE
GCCATGGCCTACTGGCATGCTGGAT
NONE
Os.30608.1.S1_at--929--2071Chr10:5361599..5361623 (25 bp)
ACATTGAGTCGTGAGCTATTTGTTC
LOC_Os10g10180
Os.30608.1.S1_at--999--3591Chr10:5361600..5361624 (25 bp)
CATTGAGTCGTGAGCTATTTGTTCG
LOC_Os10g10180
Os.30608.1.S1_at--493--51Chr10:5361601..5361625 (25 bp)
ATTGAGTCGTGAGCTATTTGTTCGA
LOC_Os10g10180
Os.30608.1.S1_at--946--8891Chr10:5361603..5361627 (25 bp)
TGAGTCGTGAGCTATTTGTTCGAGA
LOC_Os10g10180
Os.30608.1.S1_at--1112--6091Chr10:5361604..5361628 (25 bp)
GAGTCGTGAGCTATTTGTTCGAGAT
LOC_Os10g10180
Os.30608.1.S1_at--942--7191Chr10:5361606..5361630 (25 bp)
GTCGTGAGCTATTTGTTCGAGATAT
LOC_Os10g10180
Target Sequence 
AAAAAAGGCCATGGCCTACTGGCATGCTGGATTTGGAGGAGACGATGAGGCAAGCAGGCTTTGTTAATGTTCATTCTATA
CTGACAGATCCCAGGCATAGGACAGTCACTGCTACCGTGCCTTTCTGAAACATCTGATCTCCCACTGAAATTTTGTTCCA
TCTCAATTGTGATTGTGGATGTATACTGGTAAACAAAAGAGTTGAAAAACTGTACCCTTGTTCATAAAATAGGACGACGG
CTGTACCAACCACAATAATTACATTGAGTCGTGAGCTATTTGTTCGAGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis