Browse Element(s) Details


Os.30611.1.S1_at

Description gb:AK108595.1
DB_XREF= gi:32993804
TID=Os.30611.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.6 (B1144G04.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-D12, full insert sequence.
FL= gb:AK108595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4855011/11expressed protein
LOC_Os03g594401/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48520NANA1+28146666..28148938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g48530OsAffx.11519.1.S1_at11/111+28160739..28162530expressed protein
LOC_Os01g48530Os.41729.1.S1_s_at11/111+28160739..28162530expressed protein
LOC_Os01g48540Os.31637.1.S1_at11/111+28167053..28169239Glyoxal oxidase N-terminus family protein, expressed
LOC_Os01g48550Os.30611.1.S1_at11/111+28170241..28171723expressed protein
LOC_Os01g48560OsAffx.11520.1.S1_at11/111+28175351..28175718hypothetical protein
LOC_Os01g48570NANA1+28179313..28182845expressed protein
LOC_Os01g48580OsAffx.21504.1.S1_at11/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48580OsAffx.23846.1.A1_at3/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48590NANA1+28192397..28192723hypothetical protein
LOC_Os01g48600OsAffx.32032.4.S1_s_at11/111+28193682..28194201CDS, putative
LOC_Os01g48610Os.26755.1.S1_at11/111+28195566..28198695expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30611.1.S1_at--179--9211Chr01:28170810..28170834 (25 bp)
TGCCAGCCTGCCACTAATGTTGTTG
LOC_Os01g48550
Os.30611.1.S1_at--475--2991Chr01:28170795..28170819 (25 bp)
AATGTTGTTGGTTCAGGTTACTGTT
LOC_Os01g48550
Os.30611.1.S1_at--524--3571Chr01:28170703..28170727 (25 bp)
CATACTCCCTCCATATAAGCTATAT
LOC_Os01g48550
Os.30611.1.S1_at--814--9793Chr11:19061185..19061204 (20 bp)
TAAGCTATATAACGCCATTGATTTT
NONE
Os.30611.1.S1_at--837--5471Chr01:28170430..28170454 (25 bp)
GAACTACTTAGCGAGTTTCATCTTC
LOC_Os01g48550
Os.30611.1.S1_at--822--4611Chr01:28170420..28170444 (25 bp)
GCGAGTTTCATCTTCTCTAACTTTT
LOC_Os01g48550
Os.30611.1.S1_at--218--8171Chr01:28170391..28170415 (25 bp)
GGAACTACTCAGCAAGTTTCACCTA
LOC_Os01g48550
Os.30611.1.S1_at--1028--5271Chr01:28170344..28170368 (25 bp)
GAATGTAGTTCATGTCACTCTCCAG
LOC_Os01g48550
Os.30611.1.S1_at--422--3332Chr03:33773569..33773678 (24 bp)
CACTCTCCAGGAGATGGATTTTCAT
LOC_Os03g59440
Os.30611.1.S1_at--643--6532Chr04:4662990..4663273 (25 bp)
GATTTTCATCTCTCGAGGGAATATT
NONE
Os.30611.1.S1_at--571--7611Chr01:28170297..28170321 (25 bp)
GGGAATATTCTCTTTTCTTACATGT
LOC_Os01g48550
Target Sequence 
TGCCAGCCTGCCACTAATGTTGTTGGTTCAGGTTACTGTTTACAGTTTAAACGAATGTTTGTTGGAATAAGAAGTGTACC
AAATGAACAAATTAATGCAACTTGAACCATACTCCCTCCATATAAGCTATATAACGCCATTGATTTTTTAAATAATATTT
AACCATTTATTTATTTAAAAATTTAGTAAAAATATATAAAATTATAAGTTAATATTGTAGTTTTTTTCATGATAAAACAA
GTCACAATGAAATAAATAATATTTATATATTTTTTAATAAAACAAATGGTTAAATGTTATGTGAAAAACCAATGATGACA
TCATATATTTTGTGACAAAGAAAGTACATATATAGCAAGTTTCAGCTTTCTTTTTCTTTAGAACTACTTAGCGAGTTTCA
TCTTCTCTAACTTTTTTTTGGAACTACTCAGCAAGTTTCACCTATGAGTGATGTGGAGGGAAATGTGAATGTAGTTCATG
TCACTCTCCAGGAGATGGATTTTCATCTCTCGAGGGAATATTCTCTTTTCTTACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis