Browse Element(s) Details

Os.30616.1.S1_s_at

Description

gb:AK108588.1
DB_XREF= gi:32993797
TID=Os.30616.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C05, full insert sequence.
FL= gb:AK108588.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49550	11/11	transposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49510	Os.9402.1.S1_at	11/11	6	+	29989036..29993453	Zinc knuckle family protein, expressed
LOC_Os06g49520	Os.10011.1.S1_at	11/11	6	+	29993594..29995122	D-isomer specific 2-hydroxyacid dehydrogenases, putative, expressed
LOC_Os06g49530	Os.17021.1.S1_at	10/11	6	+	29995313..29998223	F-box domain containing protein, expressed
LOC_Os06g49540	Os.14919.1.S1_at	7/11	6	+	29999124..30005104	transposon protein, putative, Mutator sub-class
LOC_Os06g49540	Os.56216.1.S1_at	2/11	6	+	29999124..30005104	transposon protein, putative, Mutator sub-class
LOC_Os06g49540	OsAffx.29313.1.S1_at	1/11	6	+	29999124..30005104	transposon protein, putative, Mutator sub-class
LOC_Os06g49550	Os.30616.1.S1_s_at	11/11	6	+	30007095..30009588	transposon protein, putative, unclassified, expressed
LOC_Os06g49550	OsAffx.28189.1.S1_at	11/11	6	+	30007095..30009588	transposon protein, putative, unclassified, expressed
LOC_Os06g49560	OsAffx.25936.7.S1_s_at	11/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560	OsAffx.25936.1.S1_s_at	11/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560	OsAffx.25936.2.S1_x_at	4/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560	OsAffx.25936.5.S1_x_at	2/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49570	NA	NA	6	+	30016944..30017561	hypothetical protein
LOC_Os06g49580	Os.10827.1.S1_x_at	10/11	6	+	30018079..30021366	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49580	Os.46055.2.S1_x_at	5/11	6	+	30018079..30021366	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49590	OsAffx.28190.1.S1_at	11/11	6	+	30022181..30022393	hypothetical protein
LOC_Os06g49600	NA	NA	6	+	30022779..30023532	hypothetical protein
LOC_Os06g49610	OsAffx.28190.1.S1_at	11/11	6	+	30025714..30025926	hypothetical protein
LOC_Os06g49620	OsAffx.15999.1.S1_at	11/11	6	+	30027722..30028111	expressed protein
LOC_Os06g49629	NA	NA	6	+	30032716..30032851	NA
LOC_Os06g49640	Os.27756.1.S1_at	11/11	6	+	30033723..30036731	INTEGRAL MEMBRANE PROTEIN, putative, expressed
LOC_Os06g49640	OsAffx.28191.1.S1_at	11/11	6	+	30033723..30036731	INTEGRAL MEMBRANE PROTEIN, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.30616.1.S1_s_at--1086--701	1	Chr06:30008572..30008596 (25 bp)	GTACATGATGCCGTTCGCGGTGTTC	LOC_Os06g49550
Os.30616.1.S1_s_at--309--43	1	Chr06:30008520..30008544 (25 bp)	ATCATATTCGGGTGCTGTCTGCTGA	LOC_Os06g49550
Os.30616.1.S1_s_at--270--607	1	Chr06:30008482..30008506 (25 bp)	GAGTTCATACACCTGGTTGTTTGAT	LOC_Os06g49550
Os.30616.1.S1_s_at--946--663	1	Chr06:30008467..30008491 (25 bp)	GTTGTTTGATACATGGCTTGCTGCA	LOC_Os06g49550
Os.30616.1.S1_s_at--238--493	1	Chr06:30008452..30008476 (25 bp)	GCTTGCTGCAATGGGTGGCCGCCAA	LOC_Os06g49550
Os.30616.1.S1_s_at--924--439	1	Chr06:30008432..30008456 (25 bp)	GCCAACCTGATCTGCTGGTGACAGA	LOC_Os06g49550
Os.30616.1.S1_s_at--226--521	1	Chr06:30008384..30008408 (25 bp)	GAATTGCGAGGGTGTTGCCCAACAC	LOC_Os06g49550
Os.30616.1.S1_s_at--316--949	1	Chr06:30008348..30008372 (25 bp)	TCTGCCAGCGGAACATTTTGAGCCT	LOC_Os06g49550
Os.30616.1.S1_s_at--360--1053	1	Chr06:30008228..30008252 (25 bp)	TTCAGGCTCGGTGGGACTATGTCAT	LOC_Os06g49550
Os.30616.1.S1_s_at--310--551	1	Chr06:30008182..30008206 (25 bp)	GAACACTTGGCTTCAGTCGTTGTAT	LOC_Os06g49550
Os.30616.1.S1_s_at--281--721	1	Chr06:30008167..30008191 (25 bp)	GTCGTTGTATGACACTCGGCAGCAA	LOC_Os06g49550

Target Sequence

GTACATGATGCCGTTCGCGGTGTTCCGGGGAATCAACCATCATTTGCAGGGGATCATATTCGGGTGCTGTCTGCTGATGG
ATGAGACAAAGAGTTCATACACCTGGTTGTTTGATACATGGCTTGCTGCAATGGGTGGCCGCCAACCTGATCTGCTGGTG
ACAGACCAGTGTAAGGCGATGGAAGCAGGAATTGCGAGGGTGTTGCCCAACACCCGCCATCGTTTCTGCCAGCGGAACAT
TTTGAGCCTATGTAAGCAGAAGTTGTCTGCTGTGTATATACAGCACATCAACCTGAAAGCTGATCTGAGGGAATGTGTCT
TTGAGGCTGAGACAATTGAGGAGTTTCAGGCTCGGTGGGACTATGTCATCCATAAGTATAATCTCGAGGAGAACACTTGG
CTTCAGTCGTTGTATGACACTCGGCAGCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis