Browse Element(s) Details


Os.30699.1.S1_at

Description gb:AK108460.1
DB_XREF= gi:32993669
TID=Os.30699.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-D07, full insert sequence.
FL= gb:AK108460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1553011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15490Os.10320.1.S1_x_at11/111+8697966..8705373phosphoadenosine phosphosulfate, putative, expressed
LOC_Os01g15500OsAffx.23260.1.S1_at11/111+8710942..8711923hypothetical protein
LOC_Os01g15510OsAffx.10015.1.S1_s_at11/111+8712257..8713650hypothetical protein
LOC_Os01g15520Os.46094.1.S1_at6/111+8714655..8717700hypothetical protein
LOC_Os01g15530Os.30699.1.S1_at11/111+8729229..8731288pentatricopeptide, putative, expressed
LOC_Os01g15540Os.24965.1.S1_at4/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15540Os.12733.3.S1_x_at1/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15550OsAffx.23261.1.S1_at11/111+8742675..8743526hypothetical protein
LOC_Os01g15560OsAffx.23262.1.S1_at9/111+8744855..8745280hypothetical protein
LOC_Os01g15570NANA1+8745907..8746146hypothetical protein
LOC_Os01g15580Os.20316.1.S1_at11/111+8747955..8752249NB-ARC domain containing protein, expressed
LOC_Os01g15590OsAffx.11064.1.S1_at11/111+8754316..8754783hypothetical protein
LOC_Os01g15600Os.1173.1.S1_at11/111+8756172..8760291Purine-rich single-stranded DNA-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30699.1.S1_at--526--211Chr01:8730694..8730718 (25 bp)
ATATTGCGCTGCTCCCTGAAAGTTT
LOC_Os01g15530
Os.30699.1.S1_at--717--3551Chr01:8730750..8730774 (25 bp)
CATCTAGTGTGAGCATTGTTCCATC
LOC_Os01g15530
Os.30699.1.S1_at--179--6691Chr01:8730767..8730791 (25 bp)
GTTCCATCACATGCCAAGTGTGCAC
LOC_Os01g15530
Os.30699.1.S1_at--912--8251Chr01:8730816..8730840 (25 bp)
GGCATGGTTTACAAGTTCTCCTAGA
LOC_Os01g15530
Os.30699.1.S1_at--392--3571Chr01:8730903..8730927 (25 bp)
CATACTGAATCATTGTTTCCAGCAA
LOC_Os01g15530
Os.30699.1.S1_at--1010--8831Chr01:8730936..8730960 (25 bp)
TGATCACTATGCCTTAATGCCTTGA
LOC_Os01g15530
Os.30699.1.S1_at--1153--4811Chr01:8730986..8731010 (25 bp)
GCTCATATTCTACGAAGCACTTGTT
LOC_Os01g15530
Os.30699.1.S1_at--619--8131Chr01:8731023..8731047 (25 bp)
GGACAACATACTTTGGTACACTCAG
LOC_Os01g15530
Os.30699.1.S1_at--1133--8031Chr01:8731111..8731135 (25 bp)
GGAGTAGTTTTTCGCCAACTCATTG
LOC_Os01g15530
Os.30699.1.S1_at--369--10831Chr01:8731227..8731251 (25 bp)
TTGGCCAAGCCTTTCTTCTTCAGTT
LOC_Os01g15530
Os.30699.1.S1_at--184--2911Chr01:8731253..8731277 (25 bp)
AAGGTACGGGCAACATCTAAACAGA
LOC_Os01g15530
Target Sequence 
ATATTGCGCTGCTCCCTGAAAGTTTGCATGATGTTGAAGAAGGGTGAGATGAACATCATCTAGTGTGAGCATTGTTCCAT
CACATGCCAAGTGTGCACAATTGAAGTTTTGTTAAGATTGATGGCATGGTTTACAAGTTCTCCTAGAGGTTAAACCCCAT
CCTTCCAGTCAGACTCAGACTGATACAGAAGATACCTGATGCAATGCTTCATACTGAATCATTGTTTCCAGCAAAACAAA
AGTGATCACTATGCCTTAATGCCTTGATGGTAAAACAGATTCCAATGATTATGCTCATATTCTACGAAGCACTTGTTTGT
ATTGAAGGAGGACAACATACTTTGGTACACTCAGAAAGAAACATATTTGCCTTGTGTGATAAGTGAACATAGCTGATAAT
TTAGAGAATGTTTTAAAGGAGTAGTTTTTCGCCAACTCATTGCATGCACAACAGCACAAGGTTGAAACTCAAGAGTAGAT
TCTTGATTGACTAGTTGTTTGATGTGAGATTTAGTCTTCTTATAGGATAAAAGTTGGCCAAGCCTTTCTTCTTCAGTTAA
AGGTACGGGCAACATCTAAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis