Browse Element(s) Details


Os.31147.1.S1_at

Description gb:AK107770.1
DB_XREF= gi:32992979
TID=Os.31147.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1607A12.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-B06, full insert sequence.
FL= gb:AK107770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0661011/11allergen, putative, expressed
LOC_Os09g242401/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06550NANA3+3276212..3279503retrotransposon protein, putative, unclassified
LOC_Os03g06560NANA3+3280130..3286286retrotransposon protein, putative, unclassified
LOC_Os03g06570Os.27797.1.A1_at11/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.6794.1.S1_x_at2/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.25518.1.S1_x_at1/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06580Os.11808.2.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.2.S1_x_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.1.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06600OsAffx.24995.1.S1_at11/113+3297008..3297951expressed protein
LOC_Os03g06610Os.31147.2.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.1.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.2.S1_x_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06620Os.2217.1.S1_a_at10/113+3317396..33203711,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os03g06630Os.40021.1.S1_a_at11/113+3321365..3323659Heat shock factor protein 1, putative, expressed
LOC_Os03g06640NANA3+3326739..3330529expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006381biological_processmRNA editing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31147.1.S1_at--247--9551Chr03:3302989..3303013 (25 bp)
TCTTCATGCCCTGACGGTAATTTGG
LOC_Os03g06610
Os.31147.1.S1_at--742--10831Chr03:3302968..3302992 (25 bp)
TTGGGACGACCAACGCAATGCACAT
LOC_Os03g06610
Os.31147.1.S1_at--486--5191Chr03:3302954..3302978 (25 bp)
GCAATGCACATAAGCGTCGTTCTCG
LOC_Os03g06610
Os.31147.1.S1_at--413--8932Chr11:15211093..15211112 (20 bp)
TGACCATTGCTGCTAAGCTGCCCAA
NONE
Os.31147.1.S1_at--1137--2911Chr03:3302823..3302847 (25 bp)
AAGGACATTGCTGCGAAGATCGATC
LOC_Os03g06610
Os.31147.1.S1_at--1055--6452Chr04:13558652..13558682 (25 bp)
GATCAATCACGCAGGCTTCGATGGG
NONE
Os.31147.1.S1_at--539--1852Chr09:14390687..14390847 (25 bp)
ACGACATTGTTGAGTTCTTGGAGAT
LOC_Os09g24240
Os.31147.1.S1_at--355--5491Chr03:3302739..3302763 (25 bp)
GAACATCGAGTGTAATGCTGCTGTA
LOC_Os03g06610
Os.31147.1.S1_at--272--9772Chr04:13558735..13558762 (25 bp)
TAATGCTGCCATTTTGTTTCTCCTC
NONE
Os.31147.1.S1_at--47--10594Chr06:3158175..3158624 (25 bp)
TTCTCTGTTGTTTGTTCTTCCCTTG
NONE
Os.31147.1.S1_at--491--6832Chr08:18073081..18073460 (25 bp)
GTTTCCCTACTAATTTGTTCCATCT
NONE
Target Sequence 
TCTTCATGCCCTGACGGTAATTTGGGACGACCAACGCAATGCACATAAGCGTCGTTCTCGTTCACCACTCCGCCATTGAT
GACCATTGCTGCTAAGCTGCCCAAGCTTGCTCTTCCCGGCTGCGTCGCCATTGCTGCACGGAGCAAGAGACAATACTGCA
GCCAAGAAGGACATTGCTGCGAAGATCGATCAATCACGCAGGCTTCGATGGGTTGGTGTGTGTAACGACATTGTTGAGTT
CTTGGAGATTGAACATCGAGTGTAATGCTGCTGTAAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGG
GCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCCTCCTCTCCTTTCATTTGTTTTTTTTTTTCTCTGTTGTTTGTTC
TTCCCTTGCGTTTTTTTGGGGAGTGGTTTCCCTACTAATTTGTTCCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis