Browse Element(s) Details


Os.31147.2.S1_x_at

Description gb:NM_187766.1
DB_XREF= gi:34902617
TID=Os.31147.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1607A12.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OJ1607A12.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0661011/11allergen, putative, expressed
LOC_Os01g609001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06550NANA3+3276212..3279503retrotransposon protein, putative, unclassified
LOC_Os03g06560NANA3+3280130..3286286retrotransposon protein, putative, unclassified
LOC_Os03g06570Os.27797.1.A1_at11/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.6794.1.S1_x_at2/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.25518.1.S1_x_at1/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06580Os.11808.2.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.2.S1_x_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.1.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06600OsAffx.24995.1.S1_at11/113+3297008..3297951expressed protein
LOC_Os03g06610Os.31147.2.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.1.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.2.S1_x_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06620Os.2217.1.S1_a_at10/113+3317396..33203711,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os03g06630Os.40021.1.S1_a_at11/113+3321365..3323659Heat shock factor protein 1, putative, expressed
LOC_Os03g06640NANA3+3326739..3330529expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31147.2.S1_x_at--976--1531Chr03:3303348..3303372 (25 bp)
AGCTTCCCTCGGTATGGGTCGAGAA
LOC_Os03g06610
Os.31147.2.S1_x_at--693--10631Chr03:3303345..3303369 (25 bp)
TTCCCTCGGTATGGGTCGAGAACTC
LOC_Os03g06610
Os.31147.2.S1_x_at--217--7212Chr04:10110961..10110984 (23 bp)
GTCGAGAACTCGGTGTTGGTTTCTT
NONE
Os.31147.2.S1_x_at--647--7751Chr03:3303320..3303344 (25 bp)
GGTGTTGGTTTCTTCGCATTCCATG
LOC_Os03g06610
Os.31147.2.S1_x_at--560--10591Chr03:3303308..3303332 (25 bp)
TTCGCATTCCATGCTTGTTCTGACG
LOC_Os03g06610
Os.31147.2.S1_x_at--1002--631Chr03:3303298..3303322 (25 bp)
ATGCTTGTTCTGACGCGCTCGATCG
LOC_Os03g06610
Os.31147.2.S1_x_at--1019--3991Chr03:3303273..3303297 (25 bp)
CGTGCCGGCCGTCGTGTTTGCAGGG
LOC_Os03g06610
Os.31147.2.S1_x_at--790--4671Chr03:3303200..3303224 (25 bp)
GCGGAGGAGGTGTACTACTCCAGCT
LOC_Os03g06610
Os.31147.2.S1_x_at--926--1911Chr03:3303067..3303091 (25 bp)
ACGTGGCCATCCAGCCAGGCCGGAG
LOC_Os03g06610
Os.31147.2.S1_x_at--174--891Chr03:3303051..3303075 (25 bp)
AGGCCGGAGCTTCCCGCTCGAGTAC
LOC_Os03g06610
Os.31147.2.S1_x_at--949--4132Chr01:35552859..35552879 (21 bp)
CGCTCGAGTACTACCCGGAGGCGTG
LOC_Os01g60900
Target Sequence 
AGCTTCCCTCGGTATGGGTCGAGAACTCGGTGTTGGTTTCTTCGCATTCCATGCTTGTTCTGACGCGCTCGATCGCGTGC
CGGCCGTCGTGTTTGCAGGGGCGTGCAGTTCGGCGAGAAAGAGGAGCGGCGACGGCGGCGGTGCGGTGGCGGAGGAGGTG
TACTACTCCAGCTGGGGATCGGCGGTGGCGGTGGCGGGGCGGCGGAGGCTGGTGGGGCCGGGGTCGTCGCCGCCGACGTG
CCGGAGCCGGTGCGGCGGCTGCCACCCATGCCGGCCGGTGCACGTGGCCATCCAGCCAGGCCGGAGCTTCCCGCTCGAGT
ACTACCCGGAGGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31147.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis