Browse Element(s) Details


Os.31151.2.S1_at

Description gb:AK070959.1
DB_XREF= gi:32980982
TID=Os.31151.2
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067J19, full insert sequence.
FL= gb:AK070959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5918011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59140OsAffx.22848.3.S1_x_at2/113+33606647..33611287retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59146OsAffx.8602.1.S1_s_at11/113+33619812..33624465hypothetical protein
LOC_Os03g59146OsAffx.8602.1.S1_x_at6/113+33619812..33624465hypothetical protein
LOC_Os03g59146Os.46735.1.S1_at4/113+33619812..33624465hypothetical protein
LOC_Os03g59152OsAffx.25764.4.S1_at11/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59152OsAffx.2812.1.S1_at1/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59160Os.25442.1.S1_at7/113+33627208..33631182Elongation factor P family protein, expressed
LOC_Os03g59170Os.16646.1.A1_at11/113+33632042..33635164adenosine 5'-phosphosulfate reductase 8, putative, expressed
LOC_Os03g59180Os.31151.2.S1_at11/113+33636039..33637411expressed protein
LOC_Os03g59190OsAffx.8923.1.S1_at9/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59190Os.51887.1.S1_x_at1/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59200Os.49605.1.A1_at11/113+33650407..33652500expressed protein
LOC_Os03g59210Os.12392.1.S1_at4/113+33655980..33656344hypothetical protein
LOC_Os03g59220Os.6828.1.S1_at11/113+33657474..33659565Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31151.2.S1_at--526--7391Chr03:33636556..33636580 (25 bp)
GTGATGGCTATGGTTGCACCTGATC
LOC_Os03g59180
Os.31151.2.S1_at--593--7911Chr03:33636567..33636591 (25 bp)
GGTTGCACCTGATCAATGTGTTGAA
LOC_Os03g59180
Os.31151.2.S1_at--87--1751Chr03:33636697..33636721 (25 bp)
ACCTTGTGCATCTTTCTGCTTGGTG
LOC_Os03g59180
Os.31151.2.S1_at--665--9552Chr12:6922022..6922365 (25 bp)
TCTTTCTGCTTGGTGGCAGGCAGCA
NONE
Os.31151.2.S1_at--847--5791Chr03:33636744..33636768 (25 bp)
GACGCAGAATCAGAAGACCCCGTTC
LOC_Os03g59180
Os.31151.2.S1_at--538--2771Chr03:33636757..33636781 (25 bp)
AAGACCCCGTTCCAGATGTATGCTG
LOC_Os03g59180
Os.31151.2.S1_at--384--1011Chr03:33637081..33637105 (25 bp)
AGGTTGTGCAGCAAGCCTCGAGACT
LOC_Os03g59180
Os.31151.2.S1_at--328--4471Chr03:33637095..33637119 (25 bp)
GCCTCGAGACTGAATCAAGCTGTGT
LOC_Os03g59180
Os.31151.2.S1_at--284--811Chr03:33637128..33637152 (25 bp)
ATGGGAGGTGCATCCACAAGGGCAA
LOC_Os03g59180
Os.31151.2.S1_at--950--2871Chr03:33637145..33637169 (25 bp)
AAGGGCAAGCATATCATTTGGTGGC
LOC_Os03g59180
Os.31151.2.S1_at--1066--6411Chr03:33637346..33637370 (25 bp)
GATCTACTAGATGTGCATATTTTGG
LOC_Os03g59180
Target Sequence 
GTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAG
TGTGGGGAAGCTGAGAGTGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTCTGC
TTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATT
CAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCAT
ATCATTTGGTGGCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGA
TCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATA
TCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGTGCATATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31151.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis