Browse Element(s) Details


Os.31177.1.S1_at

Description gb:AK107724.1
DB_XREF= gi:32992933
TID=Os.31177.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (B1109A06.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E12, full insert sequence.
FL= gb:AK107724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2974011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29690NANA1+16963803..16964305expressed protein
LOC_Os01g29700NANA1+16971595..16974900transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29710Os.47463.1.S1_x_at5/111+16976394..16981237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29710Os.14491.2.S1_x_at4/111+16976394..16981237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29710Os.41934.1.A1_x_at2/111+16976394..16981237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29720OsAffx.9762.1.S1_at9/111+16982924..16983816hypothetical protein
LOC_Os01g29730NANA1+16984302..16985380hypothetical protein
LOC_Os01g29740Os.31177.1.S1_at11/111+16986600..16991281expressed protein
LOC_Os01g29750Os.41695.15.S1_s_at9/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.5.S1_x_at8/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.4.S1_x_at3/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.2.S1_x_at3/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.3.S1_x_at3/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29760NANA1+17000663..17005278retrotransposon protein, putative, unclassified, expressed
LOC_Os01g29770NANA1+17010747..17011072hypothetical protein
LOC_Os01g29780Os.31845.2.S1_x_at1/111+17014563..17016473retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31177.1.S1_at--544--7951Chr01:16989695..16989719 (25 bp)
GGATACGCATATTCTTTGCAGTTCT
LOC_Os01g29740
Os.31177.1.S1_at--539--10271Chr01:16989709..16989733 (25 bp)
TTTGCAGTTCTGTTCTGGATGGCAC
LOC_Os01g29740
Os.31177.1.S1_at--698--6711Chr01:16989720..16989744 (25 bp)
GTTCTGGATGGCACTGTTTTTCTGG
LOC_Os01g29740
Os.31177.1.S1_at--225--5131Chr01:16989779..16989803 (25 bp)
GCACAAAGCGCCAACGATTCCGTAA
LOC_Os01g29740
Os.31177.1.S1_at--845--7971Chr01:16989814..16989838 (25 bp)
GGATCCTTTATCAAAGTTCACTGGT
LOC_Os01g29740
Os.31177.1.S1_at--278--7051Chr01:16990960..16990984 (25 bp)
GTAATACAAAGGTGGGTGCTGCTCC
LOC_Os01g29740
Os.31177.1.S1_at--205--4772Chr02:12096815..12096842 (25 bp)
GCTGCTCCTTGCCAAAGTAGTTCTG
NONE
Os.31177.1.S1_at--1149--6471Chr01:16991001..16991025 (25 bp)
GATACCCCAAAGGAGGCTGGCTCGA
LOC_Os01g29740
Os.31177.1.S1_at--694--9951Chr01:16991045..16991069 (25 bp)
TACCCTTCATTCCACAGCAACAAAA
LOC_Os01g29740
Os.31177.1.S1_at--476--8771Chr01:16991153..16991177 (25 bp)
TGTATTTGCTGCTCACTGCTAGGGC
LOC_Os01g29740
Os.31177.1.S1_at--453--6251Chr01:16991254..16991278 (25 bp)
GATGGTCTGAACACCTCAAGGTTAG
LOC_Os01g29740
Target Sequence 
GGATACGCATATTCTTTGCAGTTCTGTTCTGGATGGCACTGTTTTTCTGGGGAAGTGCTTGGGATGGGAATAACAATTCA
GGAGGCACAAAGCGCCAACGATTCCGTAAGAAATCGTGAGGATCCTTTATCAAAGTTCACTGGTAATACAAAGGTGGGTG
CTGCTCCTTGCCAAAGTAGTTCTGATACCCCAAAGGAGGCTGGCTCGATGGTGGGTACGTCTGCGTGTACCCTTCATTCC
ACAGCAACAAAAACCTAAAATAGATCAGAGAATATCGATGAAAAGAATTATAATTTGTTTTACACCATTTGTAATATCTA
AGCAAATTTTTAGAGTGTATTTGCTGCTCACTGCTAGGGCAGTGATAGGAAGTGGAGCAGATTGATATTTAAACCTATAC
TATTATGAGAAGCATTTTGTTAACCTTAATGCTGATGATGGTCTGAACACCTCAAGGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis