Browse Element(s) Details


Os.31344.1.S1_at

Description gb:AK107493.1
DB_XREF= gi:32992702
TID=Os.31344.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683F02.18 (P0683F02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D04, full insert sequence.
FL= gb:AK107493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6397011/11sialyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63940Os.55646.1.S1_at11/111+37445313..37447791Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g63950Os.27631.1.S1_at11/111+37449981..37453698expressed protein
LOC_Os01g63960OsAffx.10048.1.S1_x_at11/111+37455270..37459619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g63970Os.31344.1.S1_at11/111+37460552..37462168sialyltransferase, putative, expressed
LOC_Os01g63980Os.36152.1.S1_at11/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.17417.2.S1_x_at2/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.17417.1.S1_x_at1/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.29835.1.S1_x_at1/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63990Os.6375.2.S1_x_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g63990Os.6375.1.S1_s_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0008373molecular_functionsialyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31344.1.S1_at--385--652Chr02:1186242..1186261 (20 bp)
ATGCAGGCCATCATGGTCGCCGTGG
NONE
Os.31344.1.S1_at--1018--131Chr01:37461721..37461745 (25 bp)
ATTACCACAGCAACCAGAAGGCGGA
LOC_Os01g63970
Os.31344.1.S1_at--1037--5291Chr01:37461737..37461761 (25 bp)
GAAGGCGGAGCTGGACCTCCACGAC
LOC_Os01g63970
Os.31344.1.S1_at--743--7191Chr01:37461852..37461876 (25 bp)
GTCGTGTTCTACCATTAGAGCGCGT
LOC_Os01g63970
Os.31344.1.S1_at--373--2891Chr01:37461883..37461907 (25 bp)
AAGGTGCTCGACGTTATGCCACTTT
LOC_Os01g63970
Os.31344.1.S1_at--272--591Chr01:37461898..37461922 (25 bp)
ATGCCACTTTTTTCCGGTGGAGGAT
LOC_Os01g63970
Os.31344.1.S1_at--630--7011Chr01:37462046..37462070 (25 bp)
GTACTAAGCATTAGGATCCCTCCAT
LOC_Os01g63970
Os.31344.1.S1_at--645--10091Chr01:37462057..37462081 (25 bp)
TAGGATCCCTCCATTAGCATACGAG
LOC_Os01g63970
Os.31344.1.S1_at--1090--311Chr01:37462075..37462099 (25 bp)
ATACGAGGACGATTTCTTCCGCTTT
LOC_Os01g63970
Os.31344.1.S1_at--529--10631Chr01:37462091..37462115 (25 bp)
TTCCGCTTTTGGCACTGTAACTGTA
LOC_Os01g63970
Os.31344.1.S1_at--618--5731Chr01:37462121..37462145 (25 bp)
GACTGATCTTTCTTCGTAATTTCAT
LOC_Os01g63970
Target Sequence 
ATGCAGGCCATCATGGTCGCCGTGGGAGTGTGCGACAGGGTGAGCGTGTTCGGGTTCGGGAAGGCGGCCGACGCGAAGCA
CCATTACCACAGCAACCAGAAGGCGGAGCTGGACCTCCACGACTACAAGGCGGAGTACGCCTTCTACCGCGACCTCGCCG
ACCGGCCGGAGGTAGTCCCCTTCCTCAACGACGCCGGTATCGCCGTCCCGCCCGTCGTGTTCTACCATTAGAGCGCGTGC
GCGCAAGGTGCTCGACGTTATGCCACTTTTTTCCGGTGGAGGATTGTGTTGTATTAGTGGCTCAGTGTAAAATGTTGCTT
CGTAAGGTGGGTTATTTTTTGTGATTAGATTGATAGACGAATTGAAATAGTAGCGAAATTTTGATATGATGGTGGGATTG
GAGGTGTGTACTAAGCATTAGGATCCCTCCATTAGCATACGAGGACGATTTCTTCCGCTTTTGGCACTGTAACTGTAATT
TAGACTGATCTTTCTTCGTAATTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis