Browse Element(s) Details


Os.31431.1.S1_at

Description gb:AK107346.1
DB_XREF= gi:32992555
TID=Os.31431.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hypersensitive-induced response protein (P0700A11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-G10, full insert sequence.
FL= gb:AK107346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4058011/11hypersensitive-induced response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40520OsAffx.11409.1.S1_at11/111+23222929..23223669hypothetical protein
LOC_Os01g40530NANA1+23224329..23225691hypothetical protein
LOC_Os01g40540OsAffx.23609.1.S1_at8/111+23226677..23227165lectin receptor-type protein kinase, putative
LOC_Os01g40550Os.20437.1.S1_at7/111+23227915..23229110Hsp20/alpha crystallin family protein, expressed
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os01g40600OsAffx.11412.1.S1_at11/111+23256091..23256966Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40610Os.24549.1.S1_at11/111+23258775..23264034Cell cycle control protein cwf16, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31431.1.S1_at--503--4631Chr01:23242020..23242044 (25 bp)
GCGATGACCATGTACGGGTACGAGA
LOC_Os01g40580
Os.31431.1.S1_at--208--7851Chr01:23242004..23242028 (25 bp)
GGTACGAGATCGTGCAGACGCTGAT
LOC_Os01g40580
Os.31431.1.S1_at--817--9131Chr01:23241953..23241977 (25 bp)
TGCGGCGCGCCATGAACGACATCAA
LOC_Os01g40580
Os.31431.1.S1_at--26--5091Chr01:23241585..23241609 (25 bp)
GCAGCCACCCTCAAGGCATTATAGT
LOC_Os01g40580
Os.31431.1.S1_at--481--5551Chr01:23241562..23241586 (25 bp)
GTAGGTTCCTAAAACCGGCAGCGCG
LOC_Os01g40580
Os.31431.1.S1_at--260--4431Chr01:23241530..23241554 (25 bp)
GCCATGTTCTTTTGTACCTGCAATT
LOC_Os01g40580
Os.31431.1.S1_at--122--1771Chr01:23241515..23241539 (25 bp)
ACCTGCAATTTTTGTGTGTGCTTTG
LOC_Os01g40580
Os.31431.1.S1_at--294--7471Chr01:23241500..23241524 (25 bp)
GTGTGCTTTGCTTGTTGCAATCCTA
LOC_Os01g40580
Os.31431.1.S1_at--116--6671Chr01:23241487..23241511 (25 bp)
GTTGCAATCCTATTAATACTCTCTG
LOC_Os01g40580
Os.31431.1.S1_at--253--3771Chr01:23241469..23241493 (25 bp)
CTCTCTGATTTCTGTGGGTATGTAT
LOC_Os01g40580
Os.31431.1.S1_at--138--7691Chr01:23241454..23241478 (25 bp)
GGGTATGTATTGGACGTTCTAGTTC
LOC_Os01g40580
Target Sequence 
GCGATGACCATGTACGGGTACGAGATCGTGCAGACGCTGATCGTGGACATCGTCCCCGACGAGGTGGTGCGGCGCGCCAT
GAACGACATCAACGCGGCGGCGCGGCTGCGCGTGGCGGCGGCGGAGCGCGCCGAGGCCGACAAGATCCAGCAGGTGAAGC
GCGCCGAGGGGGAGGCCGAGGCCAAGTACCTCGCCGGCGTCGGCGTGGCCCGGCAGCGCCAGGCCATCGTCGAGGGCCTC
AAGCGCTTCGTCCCCAACGAGAAGGACGTCATGGACATGGTGCTCGTCACCCAGTACTTCGACACCATCCGCGACATCGG
CGCCACCTCCAGGTCCTCCACCGTCTTCATCCCCCACGGCCCCAGCGCCGTCCGCGACATGGCCGCGCAGGTCCGCGACG
GCCTCCTCCAGGCCACCGCCGCCGCCGGAGGAGGAGCAGCCACCCTCAAGGCATTATAGTAGGTTCCTAAAACCGGCAGC
GCGCGCCGCCGCCATGTTCTTTTGTACCTGCAATTTTTGTGTGTGCTTTGCTTGTTGCAATCCTATTAATACTCTCTGAT
TTCTGTGGGTATGTATTGGACGTTCTAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis