Browse Element(s) Details


Os.31602.1.S1_at

Description gb:AK107058.1
DB_XREF= gi:32992267
TID=Os.31602.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-D10, full insert sequence.
FL= gb:AK107058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3374011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33710Os.18672.1.S1_s_at6/112+20103243..20106357Histidine decarboxylase, putative, expressed
LOC_Os02g33720OsAffx.24559.1.S1_x_at11/112+20112353..20112961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33740Os.31602.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33740OsAffx.2847.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33750Os.50564.1.A1_s_at11/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33750Os.50564.2.S1_at10/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33760OsAffx.2848.1.S1_at11/112+20136469..20138777hypothetical protein
LOC_Os02g33770Os.8837.1.S1_at11/112+20142014..20144139expressed protein
LOC_Os02g33780Os.56326.2.S1_at11/112+20146585..20148253expressed protein
LOC_Os02g33790OsAffx.24561.1.S1_at11/112+20151874..20152900hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31602.1.S1_at--649--9431Chr02:20125975..20125999 (25 bp)
TCGGTGCCACTATTTTCTACTGCGT
LOC_Os02g33740
Os.31602.1.S1_at--1049--9911Chr02:20125992..20126016 (25 bp)
TACTGCGTCGCATTGTCCATGGTCA
LOC_Os02g33740
Os.31602.1.S1_at--503--5391Chr02:20126043..20126198 (25 bp)
GAAGCAGACTCTGTAGCAGCGGCAG
LOC_Os02g33740
Os.31602.1.S1_at--1130--9251Chr02:20126207..20126231 (25 bp)
TCCTCCGACCTGAAGGCGGACAAGT
LOC_Os02g33740
Os.31602.1.S1_at--28--2231Chr02:20126226..20126250 (25 bp)
ACAAGTTGACCTCGCGCAAGCTGAT
LOC_Os02g33740
Os.31602.1.S1_at--1035--6311Chr02:20126851..20126875 (25 bp)
GATGAAGTGCTGAGCTCGGTCCATA
LOC_Os02g33740
Os.31602.1.S1_at--454--9431Chr02:20126866..20126890 (25 bp)
TCGGTCCATATCACTCCATTGTTGC
LOC_Os02g33740
Os.31602.1.S1_at--394--3591Chr02:20126882..20126906 (25 bp)
CATTGTTGCTAGCTTTTGGCCTGAT
LOC_Os02g33740
Os.31602.1.S1_at--806--8451Chr02:20126898..20126922 (25 bp)
TGGCCTGATTTGTACTCTACCTAAC
LOC_Os02g33740
Os.31602.1.S1_at--1128--9811Chr02:20126919..20126943 (25 bp)
TAACAACAAATGACCCTTTCGCTGC
LOC_Os02g33740
Os.31602.1.S1_at--1135--3671Chr02:20126934..20126958 (25 bp)
CTTTCGCTGCCTTGCAATGTAATTA
LOC_Os02g33740
Target Sequence 
TCGGTGCCACTATTTTCTACTGCGTCGCATTGTCCATGGTCATCGTGATGACCCAATTGCCCCCCACCGAAGCAGACTCT
GTAGCAGCGGCAGAGTTCGCGTCCTCCGACCTGAAGGCGGACAAGTTGACCTCGCGCAAGCTGATGGGCGCCGCTAACGC
GCCGGCGCCGGCGCCGCTAGGGATGTGCCCAGTGCGGTTCGACGAGATGAAGGGGCCATTCACCGAGCTAGGAAAGAAGT
GCAAGGCGGCATCGGTGACGGAGTGTTGCGACGCGTTCAAGGAGATCGCGTGCCCACACAACACGCTGCTCAACGACCTC
AACAATGGGTGTGGGGACGATATGTTCTACTTCATCCACACCTACGGCCGCCTGCCGCCCGGAACCATCTTCAAGAAATG
TGTCGAGGGACCCTATGGGATGAAGTGCTGAGCTCGGTCCATATCACTCCATTGTTGCTAGCTTTTGGCCTGATTTGTAC
TCTACCTAACAACAAATGACCCTTTCGCTGCCTTGCAATGTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis