Browse Element(s) Details


Os.31778.1.S1_x_at

Description gb:AK106774.1
DB_XREF= gi:32991983
TID=Os.31778.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) leucoanthocyanidin dioxygenase-like protein (P0460C04.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-G04, full insert sequence.
FL= gb:AK106774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6161010/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed
LOC_Os01g61590Os.12649.2.S1_x_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61590Os.12649.1.S1_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61610Os.31778.1.S1_x_at10/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61610Os.31778.2.S1_x_at8/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61620Os.14313.2.S1_s_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61620Os.14313.2.S1_x_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61620Os.14313.1.S1_s_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61630Os.38044.1.S1_at11/111+35985593..35987794pentatricopeptide, putative, expressed
LOC_Os01g61640Os.19412.1.S1_at11/111+35987935..35990748NLI interacting factor-like phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31778.1.S1_x_at--134--8391NONE
GGCGACCAGATTGAGATCTTGAGCA
NONE
Os.31778.1.S1_x_at--1--8551Chr01:35967258..35967282 (25 bp)
TGGAGCACCGCGTGATCGTGAACGC
LOC_Os01g61610
Os.31778.1.S1_x_at--609--671Chr01:35967395..35967419 (25 bp)
ATGACCTTCGACGAGTACAGGGTGT
LOC_Os01g61610
Os.31778.1.S1_x_at--891--7431Chr01:35967416..35967440 (25 bp)
GTGTACGTCAGGAAGAATGGCCCCA
LOC_Os01g61610
Os.31778.1.S1_x_at--727--5171Chr01:35967444..35967468 (25 bp)
GCAAGGCACAGCTTGAGGCTCTCAA
LOC_Os01g61610
Os.31778.1.S1_x_at--201--9731Chr01:35967523..35967547 (25 bp)
TAATTAAGCTACACCGATCGATCCA
LOC_Os01g61610
Os.31778.1.S1_x_at--4--6371Chr01:35967542..35967566 (25 bp)
GATCCAACAGCGACGGCATGCTAAT
LOC_Os01g61610
Os.31778.1.S1_x_at--623--3031Chr01:35967564..35967588 (25 bp)
AATCCATGGATCGAACTAGCAAGCT
LOC_Os01g61610
Os.31778.1.S1_x_at--509--10011Chr01:35967596..35967620 (25 bp)
TAGCAGTCAGCATTAATTATCCCAT
LOC_Os01g61610
Os.31778.1.S1_x_at--440--2111Chr01:35967661..35967685 (25 bp)
ACATGGCCTACTTAATTTACGCAAC
LOC_Os01g61610
Os.31778.1.S1_x_at--440--4991Chr01:35967733..35967757 (25 bp)
GCATGCGTGCTCACTATCTGAAGTA
LOC_Os01g61610
Target Sequence 
GGCGACCAGATTGAGATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAACGCCGAGGAGGAGCG
CATCTCGCTCGCACTCTTCTACAACCCGAGAGGCGACGTCCCGGTGGCGCCGGCGCCGGAGCTGGTGACGCCGGAGCGGC
CGTCGCTCTACTACCGTCCGATGACCTTCGACGAGTACAGGGTGTACGTCAGGAAGAATGGCCCCAAGGGCAAGGCACAG
CTTGAGGCTCTCAAGGGCCAGTCAATCACCCAAAACAACGAATAATAAATAATTAGTAATTAATTAACTAATTAAGCTAC
ACCGATCGATCCAACAGCGACGGCATGCTAATCCATGGATCGAACTAGCAAGCTAGCTAGCTAGCAGTCAGCATTAATTA
TCCCATGTATGATCTGAATCGGAATAACACATGCATGAGTGTGTGTACATGGCCTACTTAATTTACGCAACATATATAGT
TATAGGCCTTAATTATAATAAGCACATATATATTGCACGCATGCGTGCTCACTATCTGAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31778.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis