Browse Element(s) Details


Os.31883.1.A1_at

Description gb:AK106579.1
DB_XREF= gi:32991788
TID=Os.31883.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-C10, full insert sequence.
FL= gb:AK106579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0601011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05950Os.55743.1.S1_at11/1111+2803518..2804262expressed protein
LOC_Os11g05960OsAffx.18698.1.S1_at11/1111+2805561..2805887hypothetical protein
LOC_Os11g05970OsAffx.18699.1.S1_at11/1111+2806826..2808073pyridine nucleotide-disulphide oxidoreductase family protein, putative
LOC_Os11g05980Os.53017.1.S1_at11/1111+2810377..2813120pentatricopeptide, putative, expressed
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os11g06000OsAffx.18700.1.S1_at11/1111+2826425..2826894hypothetical protein
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein
LOC_Os11g06020Os.11805.1.A1_s_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06020OsAffx.30836.1.S1_x_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06030OsAffx.7010.1.S1_at10/1111+2839740..2841509hypothetical protein
LOC_Os11g06040Os.35800.1.S1_s_at11/1111+2856728..2864854phox domain-containing protein, putative, expressed
LOC_Os11g06040Os.35800.1.S1_at8/1111+2856728..2864854phox domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31883.1.A1_at--898--4911Chr11:2833067..2833091 (25 bp)
GCTTGTGCGCTTACTGGAACCCAAT
LOC_Os11g06010
Os.31883.1.A1_at--204--2231Chr11:2833123..2833147 (25 bp)
ACAATGTCAACATGCCTCTTGGCTT
LOC_Os11g06010
Os.31883.1.A1_at--1013--10811Chr11:2833141..2833165 (25 bp)
TTGGCTTGGTGCACCAACCTGTTAT
LOC_Os11g06010
Os.31883.1.A1_at--495--931Chr11:2833249..2833273 (25 bp)
AGGAATTCGGTTTCGTTCCTGCCAT
LOC_Os11g06010
Os.31883.1.A1_at--137--4951Chr11:2833279..2833303 (25 bp)
GCATTGCCAATTTGCTGGTGCACAC
LOC_Os11g06010
Os.31883.1.A1_at--467--4891Chr11:2833309..2833333 (25 bp)
GCTTTCATGTGACATCTTGCTGTGA
LOC_Os11g06010
Os.31883.1.A1_at--1095--2971Chr11:2833335..2833359 (25 bp)
AATGTGCCATCTTTGCTGCGAGCCA
LOC_Os11g06010
Os.31883.1.A1_at--1160--5851Chr11:2833354..2833378 (25 bp)
GAGCCATCTGATCCCAAAGTCTAGA
LOC_Os11g06010
Os.31883.1.A1_at--782--9991Chr11:2833444..2833468 (25 bp)
TAGCCTGTATAATCTTAGTCTTCTT
LOC_Os11g06010
Os.31883.1.A1_at--479--7931Chr11:2833504..2833528 (25 bp)
GGATTCTCTACTGTTATCCTGAATG
LOC_Os11g06010
Os.31883.1.A1_at--583--3571Chr11:2833553..2833577 (25 bp)
CATTGAGAATCGTAAAGCCCCTTTT
LOC_Os11g06010
Target Sequence 
GCTTGTGCGCTTACTGGAACCCAATTGCGACAGCAGTGGAGCAGCGGAAAATGCTAACAATGTCAACATGCCTCTTGGCT
TGGTGCACCAACCTGTTATCCCGGCGACAGGTNGAATCCAGTGNCCNCTGACAAGTAGATGAANCAATCATCATCTTCAG
GAAGACATCAAGTGCTAAGAGCAGGAATTCGGTTTCGTTCCTGCCATGACTAGCATTGCCAATTTGCTGGTGCACACCNC
CTGCTTTCATGTGACATCTTGCTGTGAAAATGTGCCATCTTTGCTGCGAGCCATCTGATCCCAAAGTCTAGAGCTGAACA
TGAGATGCATCAGAGAAGAGGGTCTGTTGATTGAGAGAATGTTCATTAGGCAGTGTTTAGCCTGTATAATCTTAGTCTTC
TTTTTTTGTTCTTAATTCTGTCTTGACATATGTTAGTGGATTCTCTACTGTTATCCTGAATGCAAATTCTTGTGTTGNTT
TGNNANCATTGAGAATCGTAAAGCCCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31883.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis