Browse Element(s) Details


Os.32021.1.S1_at

Description gb:AK106308.1
DB_XREF= gi:32991517
TID=Os.32021.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C12, full insert sequence.
FL= gb:AK106308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1362011/11Glycine-rich RNA-binding protein GRP2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13570OsAffx.19542.3.S1_x_at7/115+7509039..7511546retrotransposon protein, putative, unclassified
LOC_Os05g13580Os.5101.1.S1_at11/115+7512956..7513896EF hand family protein, expressed
LOC_Os05g13590OsAffx.26866.1.S1_at11/115+7515488..7519847hypothetical protein
LOC_Os05g13590OsAffx.14673.1.S1_at10/115+7515488..7519847hypothetical protein
LOC_Os05g13600NANA5+7520740..7522875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.1.S1_x_at9/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.2.S1_x_at7/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.3.S1_x_at6/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.5.S1_x_at3/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13620Os.32021.1.S1_at11/115+7531814..7533163Glycine-rich RNA-binding protein GRP2A, putative, expressed
LOC_Os05g13630Os.52857.1.S1_at11/115+7537387..7538520RNA recognition motif family protein, expressed
LOC_Os05g13640NANA5+7539030..7539443hypothetical protein
LOC_Os05g13650Os.52857.1.S1_at1/115+7541950..7542710RNA recognition motif family protein
LOC_Os05g13660OsAffx.14674.1.S1_at11/115+7545695..7546972hypothetical protein
LOC_Os05g13670OsAffx.26868.1.S1_at11/115+7551512..7552506hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32021.1.S1_at--625--4231Chr05:7532631..7532652 (22 bp)
CCGAGATCGCTGTGGACCGTGAGAC
LOC_Os05g13620
Os.32021.1.S1_at--333--1551Chr05:7532681..7532705 (25 bp)
AGCTTCCAGGACAGCAAGTCGGCGA
LOC_Os05g13620
Os.32021.1.S1_at--733--4611Chr05:7532702..7532726 (25 bp)
GCGAGCGACGCCATCAAGGGCATGA
LOC_Os05g13620
Os.32021.1.S1_at--535--4831Chr05:7532835..7532859 (25 bp)
GCTCAAGCCTACCTATCTAGATACT
LOC_Os05g13620
Os.32021.1.S1_at--361--1271Chr05:7532853..7532877 (25 bp)
AGATACTGCTACTAGTTGTGCTACT
LOC_Os05g13620
Os.32021.1.S1_at--753--6631Chr05:7532867..7532891 (25 bp)
GTTGTGCTACTATCAGTTTCAGTTT
LOC_Os05g13620
Os.32021.1.S1_at--936--10531Chr05:7532884..7532908 (25 bp)
TTCAGTTTCAGAGTCGCGTTCGTGT
LOC_Os05g13620
Os.32021.1.S1_at--367--8591Chr05:7532968..7532992 (25 bp)
TGGTAATCTCCTTCGTAGTTTGGGT
LOC_Os05g13620
Os.32021.1.S1_at--1020--3851Chr05:7533027..7533051 (25 bp)
CTGTTGGTAATCTCTCGTTGGTAGT
LOC_Os05g13620
Os.32021.1.S1_at--277--10811Chr05:7533095..7533119 (25 bp)
TTGTCAGGCTCTGTTGGTAACCTCC
LOC_Os05g13620
Os.32021.1.S1_at--22--10131Chr05:7533124..7533148 (25 bp)
TATGAATCCTTTTGTCGTCGACGGC
LOC_Os05g13620
Target Sequence 
CCGAGATCGCTGTGGACCGTGAGACGGGGAGGTCCCGCGGGTTCGGGTTCGTGAGCTTCCAGGACAGCAAGTCGGCGAGC
GACGCCATCAAGGGCATGAACGGCCAGGACATCGGCGGCCGCAACGTCATCGTCCAGGAGGCCCAGCCGCGCTCCCGCCG
CTGAGCGCACGGNGCCGGCGGACCAGCCGCCGGCGTGNAAGACTACGCGCTCAAGCCTACCTATCTAGATACTGCTACTA
GTTGTGCTACTATCAGTTTCAGTTTCAGAGTCGCGTTCGTGTTCGTAGTTTGGTTAATTAATGTAGTAGGGTTTAAGAGA
TTGATGCCAATGAGGCTCTGTTGGTAATCTCCTTCGTAGTTTGGGTTTAATAAGAGATATGGGTGGTTAATTATCAGGCT
CTGTTGGTAATCTCTCGTTGGTAGTTTGGTCAATGTACTAGGGTTTAAGAGATGGATGGGATGGTTAATTGTCAGGCTCT
GTTGGTAACCTCCTGGATATGAATCCTTTTGTCGTCGACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis