Browse Element(s) Details


OsAffx.14673.1.S1_at

Description tigr:9633.m01175
TID=OsAffx.14673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:MXC7.12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1359010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13550OsAffx.4326.1.S1_at11/115+7498227..7498694hypothetical protein
LOC_Os05g13560NANA5+7500671..7500967hypothetical protein
LOC_Os05g13570OsAffx.19542.3.S1_x_at7/115+7509039..7511546retrotransposon protein, putative, unclassified
LOC_Os05g13580Os.5101.1.S1_at11/115+7512956..7513896EF hand family protein, expressed
LOC_Os05g13590OsAffx.26866.1.S1_at11/115+7515488..7519847hypothetical protein
LOC_Os05g13590OsAffx.14673.1.S1_at10/115+7515488..7519847hypothetical protein
LOC_Os05g13600NANA5+7520740..7522875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.1.S1_x_at9/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.2.S1_x_at7/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.3.S1_x_at6/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.5.S1_x_at3/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13620Os.32021.1.S1_at11/115+7531814..7533163Glycine-rich RNA-binding protein GRP2A, putative, expressed
LOC_Os05g13630Os.52857.1.S1_at11/115+7537387..7538520RNA recognition motif family protein, expressed
LOC_Os05g13640NANA5+7539030..7539443hypothetical protein
LOC_Os05g13650Os.52857.1.S1_at1/115+7541950..7542710RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14673.1.S1_at--271--4611NONE
GCGGCGTCGACCGTTTTAACGCTGA
NONE
OsAffx.14673.1.S1_at--849--2551Chr05:7517834..7517858 (25 bp)
AACTGAAGGCGAGGATCTTGACAAT
LOC_Os05g13590
OsAffx.14673.1.S1_at--443--2991Chr05:7517767..7517791 (25 bp)
AATGTAATTGGTGCAGGTTCGGTGA
LOC_Os05g13590
OsAffx.14673.1.S1_at--416--2831Chr05:7517174..7517198 (25 bp)
AAGTTCTCTGTCTTGGAGACGCCAC
LOC_Os05g13590
OsAffx.14673.1.S1_at--774--5991Chr05:7517159..7517183 (25 bp)
GAGACGCCACACACTGGTGTAGTGA
LOC_Os05g13590
OsAffx.14673.1.S1_at--1096--6531Chr05:7517136..7517160 (25 bp)
GATTTTCAATGCTGTTCTCAAATGC
LOC_Os05g13590
OsAffx.14673.1.S1_at--1013--6771Chr05:7517060..7517084 (25 bp)
GTTAGCAACTATGGTTCGATGGCAA
LOC_Os05g13590
OsAffx.14673.1.S1_at--781--10731Chr05:7516979..7517003 (25 bp)
TTGCATCAACGTTGTGCAGCACATA
LOC_Os05g13590
OsAffx.14673.1.S1_at--659--9531Chr05:7516953..7516977 (25 bp)
TCTAAATCTCATATGTCAAGCTGGA
LOC_Os05g13590
OsAffx.14673.1.S1_at--765--2911Chr05:7516915..7516939 (25 bp)
AAGGCACTGTTACTAAGATACGGGA
LOC_Os05g13590
OsAffx.14673.1.S1_at--455--6011Chr05:7516892..7516916 (25 bp)
GAGAGTGCTAAATACGTCCGTAGTT
LOC_Os05g13590
Target Sequence 
GCGGCGTCGACCGTTTTAACGCTGAAACTGAAGGCGAGGATCTTGACAATGAGGTTGATGATGGGGTTGATGATGAGGAT
GGAGAAGTTGCCAATGTAATTGGTGCAGGTTCGGTGAAGATTATCAAGTTCTCTGTCTTGGAGACGCCACACACTGGTGT
AGTGATTTTCAATGCTGTTCTCAAATGCATTCAAGAGTGGAACTTGGAAAACAAACTATTTGCAATAACATTGGACAATG
TTAGCAACTATGGTTCGATGGCAAAGGTACTGAGAGAGAATTTGCTAGCTAAGGGAGTAATAGTTGGTCAAGGGAAGTTT
TTGCATCAACGTTGTGCAGCACATATTCTAAATCTCATATGTCAAGCTGGATTGAAGTTCATTAAAGGCACTGTTACTAA
GATACGGGAGAGTGCTAAATACGTCCGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis