Browse Element(s) Details


OsAffx.26866.1.S1_at

Description tigr:9633.m01174
TID=OsAffx.26866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1359011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13550OsAffx.4326.1.S1_at11/115+7498227..7498694hypothetical protein
LOC_Os05g13560NANA5+7500671..7500967hypothetical protein
LOC_Os05g13570OsAffx.19542.3.S1_x_at7/115+7509039..7511546retrotransposon protein, putative, unclassified
LOC_Os05g13580Os.5101.1.S1_at11/115+7512956..7513896EF hand family protein, expressed
LOC_Os05g13590OsAffx.26866.1.S1_at11/115+7515488..7519847hypothetical protein
LOC_Os05g13590OsAffx.14673.1.S1_at10/115+7515488..7519847hypothetical protein
LOC_Os05g13600NANA5+7520740..7522875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.1.S1_x_at9/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.2.S1_x_at7/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.3.S1_x_at6/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.5.S1_x_at3/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13620Os.32021.1.S1_at11/115+7531814..7533163Glycine-rich RNA-binding protein GRP2A, putative, expressed
LOC_Os05g13630Os.52857.1.S1_at11/115+7537387..7538520RNA recognition motif family protein, expressed
LOC_Os05g13640NANA5+7539030..7539443hypothetical protein
LOC_Os05g13650Os.52857.1.S1_at1/115+7541950..7542710RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26866.1.S1_at--206--8011Chr05:7516465..7516489 (25 bp)
GGATGGCACTATGTATTCCTATCAT
LOC_Os05g13590
OsAffx.26866.1.S1_at--503--8771Chr05:7516454..7516478 (25 bp)
TGTATTCCTATCATCTTGTACCCAC
LOC_Os05g13590
OsAffx.26866.1.S1_at--142--431Chr05:7516442..7516466 (25 bp)
ATCTTGTACCCACGGTTCACGTTAT
LOC_Os05g13590
OsAffx.26866.1.S1_at--712--7891Chr05:7516429..7516453 (25 bp)
GGTTCACGTTATCCTTTCTTGAGTT
LOC_Os05g13590
OsAffx.26866.1.S1_at--151--10331Chr05:7516415..7516439 (25 bp)
TTTCTTGAGTTTCACTTTGGCCCTG
LOC_Os05g13590
OsAffx.26866.1.S1_at--478--8411Chr05:7516397..7516421 (25 bp)
GGCCCTGCCTTTGGGAAACGTGCTA
LOC_Os05g13590
OsAffx.26866.1.S1_at--501--5551Chr05:7516383..7516407 (25 bp)
GAAACGTGCTAAACCTAGGCTTGAA
LOC_Os05g13590
OsAffx.26866.1.S1_at--904--5611Chr05:7516350..7516374 (25 bp)
GACAACCCTCGAGGGCATGTTCAAT
LOC_Os05g13590
OsAffx.26866.1.S1_at--428--9091Chr05:7516320..7516344 (25 bp)
TGCTCAGCAAACGATCAACCTTGGT
LOC_Os05g13590
OsAffx.26866.1.S1_at--437--3251Chr05:7516305..7516329 (25 bp)
CAACCTTGGTTCTGCGCAACAATGG
LOC_Os05g13590
OsAffx.26866.1.S1_at--674--3151Chr05:7516249..7516273 (25 bp)
AATTGGCTTATTGGGATCAACACGT
LOC_Os05g13590
Target Sequence 
GGATGGCACTATGTATTCCTATCATCTTGTACCCACGGTTCACGTTATCCTTTCTTGAGTTTCACTTTGGCCCTGCCTTT
GGGAAACGTGCTAAACCTAGGCTTGAAAGATTAAAGACAACCCTCGAGGGCATGTTCAATGAATATGCTCAGCAAACGAT
CAACCTTGGTTCTGCGCAACAATGGGGTGGTAATGTTGAGATAGGTAGTTGTGATGAATTGGCTTATTGGGATCAACACG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis