Browse Element(s) Details


Os.32042.1.S1_at

Description gb:AK106262.1
DB_XREF= gi:32991471
TID=Os.32042.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.21 (P0039H02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F08, full insert sequence.
FL= gb:AK106262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g071509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07110Os.46314.2.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110Os.27691.1.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110OsAffx.32036.1.S1_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.2.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.1.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07130Os.31929.11.S1_x_at11/117+3522202..3524008hypothetical protein
LOC_Os07g07140Os.46018.1.S1_x_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07140Os.46018.1.S1_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07150Os.32042.2.S1_x_at11/117+3537843..3540491expressed protein
LOC_Os07g07150Os.32042.1.S1_at9/117+3537843..3540491expressed protein
LOC_Os07g07160OsAffx.28320.1.S1_at11/117+3543079..3544314hypothetical protein
LOC_Os07g07160Os.46018.1.S1_x_at1/117+3543079..3544314hypothetical protein
LOC_Os07g07170OsAffx.16131.1.S1_at10/117+3545801..3546892Plastocyanin-like domain containing protein
LOC_Os07g07180Os.46676.1.A1_x_at1/117+3554293..3556922N-terminal acetyltransferase, putative
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32042.1.S1_at--833--6051Chr07:3538158..3538182 (25 bp)
GAGTTGCAACAACCGTTTCATCTGT
LOC_Os07g07150
Os.32042.1.S1_at--702--3251Chr07:3538149..3538173 (25 bp)
CAACCGTTTCATCTGTGGAGACTAT
LOC_Os07g07150
Os.32042.1.S1_at--1002--8051NONE
GGAGACTATAGTCTACCATAGCTTG
NONE
Os.32042.1.S1_at--1051--7911Chr07:3538095..3538119 (25 bp)
GGTTGTAGAGACTTCCATCCACATA
LOC_Os07g07150
Os.32042.1.S1_at--586--3631Chr07:3538084..3538108 (25 bp)
CTTCCATCCACATAGTACAGTCTTT
LOC_Os07g07150
Os.32042.1.S1_at--244--2491NONE
AACAGACCATAGTTCCTACCCATAT
NONE
Os.32042.1.S1_at--402--7491Chr07:3537976..3538000 (25 bp)
GTGGTGCTAAAACCTCTCTTTAAAT
LOC_Os07g07150
Os.32042.1.S1_at--459--10711Chr07:3537907..3537931 (25 bp)
TTGCCCTTGCTTTTGGATGGGACCA
LOC_Os07g07150
Os.32042.1.S1_at--45--7611Chr07:3537889..3537913 (25 bp)
GGGACCATTCCTATCAAAACAGTAA
LOC_Os07g07150
Os.32042.1.S1_at--1158--2251Chr07:3537866..3537890 (25 bp)
AAATACTGTTGTTCTGGGTGTCTGA
LOC_Os07g07150
Os.32042.1.S1_at--967--7711Chr07:3537851..3537875 (25 bp)
GGGTGTCTGAACTGTGTTTCTTGAT
LOC_Os07g07150
Target Sequence 
GAGTTGCAACAACCGTTTCATCTGTGGAGACTATAGTCTACCATAGCTTGTTTTCTTTGATGTGGTTGTAGAGACTTCCA
TCCACATAGTACAGTCTTTACTTCAGTACATTTTCGTAGTGATTACAGAACATGACAAAGGGAGAACAGACCATAGTTCC
TACCCATATACAGGGTGAAAAGGTGGTGCTAAAACCTCTCTTTAAATCAAATATTTTCCAATATGCAAGGGGCCTGTTTG
CAAATCTTTTTTTGCCCTTGCTTTTGGATGGGACCATTCCTATCAAAACAGTAAATACTGTTGTTCTGGGTGTCTGAACT
GTGTTTCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis