Browse Element(s) Details


Os.32042.2.S1_x_at

Description gb:NM_186460.1
DB_XREF= gi:34900005
GEN=P0039H02.21
TID=Os.32042.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.21 (P0039H02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0039H02.21 (P0039H02.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0715011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07110Os.46314.2.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110Os.27691.1.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110OsAffx.32036.1.S1_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.2.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.1.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07130Os.31929.11.S1_x_at11/117+3522202..3524008hypothetical protein
LOC_Os07g07140Os.46018.1.S1_x_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07140Os.46018.1.S1_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07150Os.32042.2.S1_x_at11/117+3537843..3540491expressed protein
LOC_Os07g07150Os.32042.1.S1_at9/117+3537843..3540491expressed protein
LOC_Os07g07160OsAffx.28320.1.S1_at11/117+3543079..3544314hypothetical protein
LOC_Os07g07160Os.46018.1.S1_x_at1/117+3543079..3544314hypothetical protein
LOC_Os07g07170OsAffx.16131.1.S1_at10/117+3545801..3546892Plastocyanin-like domain containing protein
LOC_Os07g07180Os.46676.1.A1_x_at1/117+3554293..3556922N-terminal acetyltransferase, putative
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32042.2.S1_x_at--592--3531Chr07:3540339..3540363 (25 bp)
CATCGCCACATTAGCGGAGAGCGCT
LOC_Os07g07150
Os.32042.2.S1_x_at--602--4791Chr07:3540305..3540329 (25 bp)
GCTCGGGAAACCGTCGCCGACGAGT
LOC_Os07g07150
Os.32042.2.S1_x_at--883--1871Chr07:3540175..3540199 (25 bp)
ACGAGGTTGTGATCGCTGGCGTCCT
LOC_Os07g07150
Os.32042.2.S1_x_at--749--7211Chr07:3540101..3540125 (25 bp)
GTCGAGTCGATGCAGTCCTACATGA
LOC_Os07g07150
Os.32042.2.S1_x_at--1106--6011Chr07:3540078..3540102 (25 bp)
GAGAGGTACTCGATTCTTCTGTTTC
LOC_Os07g07150
Os.32042.2.S1_x_at--253--4051Chr07:3540068..3540092 (25 bp)
CGATTCTTCTGTTTCGGAGAGCGCG
LOC_Os07g07150
Os.32042.2.S1_x_at--604--8691Chr07:3540043..3540067 (25 bp)
TGTGCTCGGACCAGATGGCCGCGCT
LOC_Os07g07150
Os.32042.2.S1_x_at--318--7851Chr07:3539976..3540000 (25 bp)
GGTAGCCATGGTTGCCGCCCGAGCT
LOC_Os07g07150
Os.32042.2.S1_x_at--152--6591Chr07:3539937..3539961 (25 bp)
GATTGCCGCGAATCCAGACGTTGAG
LOC_Os07g07150
Os.32042.2.S1_x_at--890--1391Chr07:3539922..3539946 (25 bp)
AGACGTTGAGAATCCTCTGCATGAT
LOC_Os07g07150
Os.32042.2.S1_x_at--465--9471Chr07:3539701..3539931 (25 bp)
TCTGCATGATATCCCCGAGAAGATC
LOC_Os07g07150
Target Sequence 
CATCGCCACATTAGCGGAGAGCGCTGCTGCAGGGGCTCGGGAAACCGTCGCCGACGAGTTCGCCAGGGCAGCGGGGTCGG
GAGCGGGAGGGCGAGGCGACGTCGCCGGATCAGCGGCCGCAGGAGTCGCCTCTGGAGCGGGAGGGCGAGACGACGCCGCC
GGGGACGAGGTTGTGATCGCTGGCGTCCTGTCGCTGGCCGACGGGCAGAAAGCCGCCGCCGCGGGCGCCATTAGCGGGGT
CGAGTCGATGCAGTCCTACATGAGAGGTACTCGATTCTTCTGTTTCGGAGAGCGCGTGTGCTCGGACCAGATGGCCGCGC
TCAAGATGGCCGCCGCGTGTGGTTCGGCCGCCGGCATGAGGGCGGTAGCCATGGTTGCCGCCCGAGCTCGGCACGCCGCA
CGGATTGCCGCGAATCCAGACGTTGAGAATCCTCTGCATGATATCCCCGAGAAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32042.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis