Browse Element(s) Details


Os.32331.1.S1_at

Description gb:AK105263.1
DB_XREF= gi:32990472
TID=Os.32331.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C12, full insert sequence.
FL= gb:AK105263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3925011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39220OsAffx.29597.1.S1_at11/118+24640118..24642902wall-associated kinase-like 1, putative
LOC_Os08g39230OsAffx.6081.1.S1_at11/118+24643979..24645776hypothetical protein
LOC_Os08g39240Os.27559.1.S1_at11/118+24647467..24653247wall-associated kinase-like 1, putative, expressed
LOC_Os08g39250Os.32331.1.S1_at11/118+24667734..24674195expressed protein
LOC_Os08g39260NANA8+24680176..24681321transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g39270Os.54871.1.S1_at10/118+24685538..24687609Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
LOC_Os08g39280OsAffx.6082.1.S1_at10/118+24690318..24693387hypothetical protein
LOC_Os08g39290Os.55246.1.S1_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39290Os.55246.1.S1_x_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32331.1.S1_at--382--7371Chr08:24668078..24668102 (25 bp)
GTGAGACATTAACCCAAGCCCTAGT
LOC_Os08g39250
Os.32331.1.S1_at--1150--4511Chr08:24668039..24668063 (25 bp)
GCCGCTGTTAGCAAAGACCACTTGT
LOC_Os08g39250
Os.32331.1.S1_at--30--1251Chr08:24668012..24668036 (25 bp)
AGTTGTGCTTCAACCTGGCGAGGAA
LOC_Os08g39250
Os.32331.1.S1_at--153--1411Chr08:24667967..24667991 (25 bp)
AGACTTGGTTCTTCTCTTGTCACGA
LOC_Os08g39250
Os.32331.1.S1_at--1152--4071Chr08:24667945..24667969 (25 bp)
CGAGCCACCGTGTAGAGTCTGTAGA
LOC_Os08g39250
Os.32331.1.S1_at--1153--3771Chr08:24667899..24667923 (25 bp)
CTCGGCCTATCTTTTCAAGGTGCGA
LOC_Os08g39250
Os.32331.1.S1_at--593--7771Chr08:24667881..24667905 (25 bp)
GGTGCGAGCTTGTTTTGTCCTACGG
LOC_Os08g39250
Os.32331.1.S1_at--612--8691Chr08:24667866..24667890 (25 bp)
TGTCCTACGGCCTGCTTTTAGAATA
LOC_Os08g39250
Os.32331.1.S1_at--471--8311Chr08:24667835..24667859 (25 bp)
GGCTACATGCTACTACCAATTTTCT
LOC_Os08g39250
Os.32331.1.S1_at--861--3171Chr08:24667781..24667805 (25 bp)
CAATCCACGCCTGTTGATGTACTAG
LOC_Os08g39250
Os.32331.1.S1_at--249--6971Chr08:24667763..24667787 (25 bp)
GTACTAGGACGTATTTTGCCTCTTT
LOC_Os08g39250
Target Sequence 
GTGAGACATTAACCCAAGCCCTAGTAAAGATTACTGACAGCCGCTGTTAGCAAAGACCACTTGTGCAGTTGTGCTTCAAC
CTGGCGAGGAAGGTGAAAAGGTGAAAACACCAGACTTGGTTCTTCTCTTGTCACGAGCCACCGTGTAGAGTCTGTAGAGT
ACAGCTACTTGTGCTGTGCCTCGGCCTATCTTTTCAAGGTGCGAGCTTGTTTTGTCCTACGGCCTGCTTTTAGAATACGC
TGAGGCTACATGCTACTACCAATTTTCTGGACAGGAAACTTCCAAAACTCTCCTTGCCAATCCACGCCTGTTGATGTACT
AGGACGTATTTTGCCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis