Browse Element(s) Details


Os.32439.1.S1_at

Description gb:AK073362.1
DB_XREF= gi:32983385
TID=Os.32439.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative homocysteine S-methyltransferase-4 (P0695H10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030E05, full insert sequence.
FL= gb:AK104962.1 gb:AK073362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5661011/11Homocysteine S-methyltransferase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed
LOC_Os01g56600Os.11758.1.S1_at11/111+32979330..32983443Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009086biological_processmethionine biosynthesis
GO:0008898molecular_functionhomocysteine S-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32439.1.S1_at--484--6411Chr01:32984269..32984293 (25 bp)
GATCTCATCGCGTTCGAGACGATCC
LOC_Os01g56610
Os.32439.1.S1_at--353--1631Chr01:32984221..32984245 (25 bp)
AGCGGCGACCCCATCACGGAGTGCG
LOC_Os01g56610
Os.32439.1.S1_at--447--8431Chr01:32984125..32984149 (25 bp)
GGCCTGATCCTCTCCATCAGGAAGG
LOC_Os01g56610
Os.32439.1.S1_at--955--1851Chr01:32984098..32984122 (25 bp)
ACGAGCAAGCCGGTCGTCGTGTACC
LOC_Os01g56610
Os.32439.1.S1_at--616--6371Chr01:32983751..32983775 (25 bp)
GATCGCGACGATTTCCCTGCAGTGG
LOC_Os01g56610
Os.32439.1.S1_at--93--1091Chr01:32983731..32983755 (25 bp)
AGTGGCCGTGCTCTAGTTGTTCCTG
LOC_Os01g56610
Os.32439.1.S1_at--646--10791Chr01:32983715..32983739 (25 bp)
TTGTTCCTGCCTTGTCGTCGATCAT
LOC_Os01g56610
Os.32439.1.S1_at--237--3551Chr01:32983693..32983717 (25 bp)
CATCGAGTCTCGTGGTTGTCTGGTT
LOC_Os01g56610
Os.32439.1.S1_at--608--1651Chr01:32983667..32983691 (25 bp)
AGCGCGCAGTTTTGTGTGTGTATCC
LOC_Os01g56610
Os.32439.1.S1_at--878--7471Chr01:32983652..32983676 (25 bp)
GTGTGTATCCATGCTTCCAATCAAT
LOC_Os01g56610
Os.32439.1.S1_at--314--3091Chr01:32983618..32983638 (21 bp)
AATAAAAATGGTTCGGTTCGTGCAG
LOC_Os01g56610
Target Sequence 
GATCTCATCGCGTTCGAGACGATCCCGAACAAGCTGGAGGCGCAGGCGAGCGGCGACCCCATCACGGAGTGCGCCGCCGT
GGCCGACGCCTGCGCGAGGGTCGGCGCCGTNGGGGTGAACTGCACCGCCCCCAGGCTGGTGCACGGCCTGATCCTCTCCA
TCAGGAAGGTGACGAGCAAGCCGGTCGTCGTGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG
GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGTGGAGGCAGGCGGGCGCCGCCCTCGTCGG
GGGTTGCTGCAGGACGAGCCCGGCCACGGTGAGGGCCATCTCGTGGGCGCTGCGTGAATCGGATGACGCCGTGGGTGGTG
ACGGCGATCGCGACGATTTCCCTGCAGTGGCCGTGCTCTAGTTGTTCCTGCCTTGTCGTCGATCATCGAGTCTCGTGGTT
GTCTGGTTGAGCGCGCAGTTTTGTGTGTGTATCCATGCTTCCAATCAATGGAAAATGGAAATAAAAATGGTTCGGTTCGT
GCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis