Browse Element(s) Details


Os.32481.2.S1_at

Description gb:NM_183462.1
DB_XREF= gi:34894051
GEN=P0436E04.10
TID=Os.32481.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0436E04.10 (P0436E04.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0436E04.10 (P0436E04.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g014205/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32481.2.S1_at--232--7631NONE
GGGACTGCTGGCATAGAACTTGCCT
NONE
Os.32481.2.S1_at--1052--8111NONE
GGACTGCTGGCATAGAACTTGCCTT
NONE
Os.32481.2.S1_at--1096--1971NONE
ACTGCTGGCATAGAACTTGCCTTCC
NONE
Os.32481.2.S1_at--739--9131Chr01:208495..208515 (21 bp)
TGCTGGCATAGAACTTGCCTTCCGA
LOC_Os01g01420
Os.32481.2.S1_at--443--4711Chr01:208495..208516 (22 bp)
GCTGGCATAGAACTTGCCTTCCGAA
LOC_Os01g01420
Os.32481.2.S1_at--25--8291Chr01:208495..208519 (25 bp)
GGCATAGAACTTGCCTTCCGAACAA
LOC_Os01g01420
Os.32481.2.S1_at--345--271Chr01:208498..208522 (25 bp)
ATAGAACTTGCCTTCCGAACAAGGG
LOC_Os01g01420
Os.32481.2.S1_at--571--10011Chr01:208499..208523 (25 bp)
TAGAACTTGCCTTCCGAACAAGGGA
LOC_Os01g01420
Os.32481.2.S1_at--461--3351NONE
TTGCCTTCCGAACAAGGGAAAGTTG
NONE
Os.32481.2.S1_at--169--9251NONE
TCCGAACAAGGGAAAGTTGGTCCAT
NONE
Os.32481.2.S1_at--671--5511NONE
GAACAAGGGAAAGTTGGTCCATACT
NONE
Target Sequence 
GGGACTGCTGGCATAGAACTTGCCTTCCGAACAAGGGAAAGTTGGTCCATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32481.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis