Browse Element(s) Details


Os.32521.2.S1_at

Description gb:AK064580.1
DB_XREF= gi:32974598
TID=Os.32521.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5 , At5g19390 (P0047B07.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-F01, full insert sequence.
FL= gb:AK064580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4645010/11pleckstrin homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46470OsAffx.19426.1.S1_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470OsAffx.19426.1.S1_x_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470Os.52655.1.S1_x_at2/117+27739788..27743199hypothetical protein
LOC_Os07g46480Os.46987.1.S1_x_at11/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46480Os.6791.1.S1_x_at1/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32521.2.S1_at--576--8871Chr07:27719510..27719534 (25 bp)
TGAGGTTAGCTAAAGATTTTCCCTT
LOC_Os07g46450
Os.32521.2.S1_at--598--171Chr07:27719525..27719549 (25 bp)
ATTTTCCCTTAATCTTCTATGCTTA
LOC_Os07g46450
Os.32521.2.S1_at--964--2531Chr07:27719535..27719559 (25 bp)
AATCTTCTATGCTTAAATTTACGAC
LOC_Os07g46450
Os.32521.2.S1_at--209--8171Chr07:27719570..27719594 (25 bp)
GGAAAATACAGAACCAACCAATTAG
LOC_Os07g46450
Os.32521.2.S1_at--804--5411Chr07:27719580..27719604 (25 bp)
GAACCAACCAATTAGCTGATGTTAG
LOC_Os07g46450
Os.32521.2.S1_at--563--4751Chr07:27719594..27719618 (25 bp)
GCTGATGTTAGCTCATTTTCTCATT
LOC_Os07g46450
Os.32521.2.S1_at--1106--9591Chr07:27719606..27719630 (25 bp)
TCATTTTCTCATTGCGCTATCATTA
LOC_Os07g46450
Os.32521.2.S1_at--270--9151Chr07:27719618..27719642 (25 bp)
TGCGCTATCATTATGGTGTGCTTAA
LOC_Os07g46450
Os.32521.2.S1_at--340--6811NONE
GTGCTTAAGGTGTAAAGTGCCCCAA
NONE
Os.32521.2.S1_at--669--7291Chr07:27719652..27719675 (24 bp)
GTGCCCCAATTATTTTTTGTGCTAT
LOC_Os07g46450
Os.32521.2.S1_at--1124--8651Chr07:27719668..27719692 (25 bp)
TGTGCTATATTTCCAACCTTTCCAT
LOC_Os07g46450
Target Sequence 
TGAGGTTAGCTAAAGATTTTCCCTTAATCTTCTATGCTTAAATTTACGACAACAGAAGTTGGAAAATACAGAACCAACCA
ATTAGCTGATGTTAGCTCATTTTCTCATTGCGCTATCATTATGGTGTGCTTAAGGTGTAAAGTGCCCCAATTATTTTTTG
TGCTATATTTCCAACCTTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32521.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis