Browse Element(s) Details


Os.32657.1.S1_at

Description gb:AK103341.1
DB_XREF= gi:32988550
TID=Os.32657.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0016I09.7 (OSJNBa0016I09.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126B18, full insert sequence.
FL= gb:AK103341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1093011/11Peptide-N4-asparagine amidase A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10880NANA1+5804847..5805142expressed protein
LOC_Os01g10890Os.1411.1.S1_at11/111+5806391..5808419CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10930Os.32657.1.S1_at11/111+5825355..5827630Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative
LOC_Os01g10950Os.14564.1.S1_at11/111+5834398..5836700Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative
LOC_Os01g10970OsAffx.22124.3.S1_s_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.2.S1_x_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.1.S1_x_at1/111+5841504..5845747Integral membrane protein DUF6 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32657.1.S1_at--323--5031Chr01:5825920..5825944 (25 bp)
GCAGTCGGCCCATGGCAGTATGAAG
LOC_Os01g10930
Os.32657.1.S1_at--754--7631Chr01:5825864..5825888 (25 bp)
GGGAGACCCATCAGGCGTATAAATA
LOC_Os01g10930
Os.32657.1.S1_at--206--6251Chr01:5825829..5825853 (25 bp)
GATGGATGCTACTTCAGGGATGTTA
LOC_Os01g10930
Os.32657.1.S1_at--856--2971Chr01:5825739..5825763 (25 bp)
AATGGTGCTAAATTCTCTCTCAGGA
LOC_Os01g10930
Os.32657.1.S1_at--950--8171Chr01:5825646..5825670 (25 bp)
GGAACTGAACTGTCCATGGTTCTCT
LOC_Os01g10930
Os.32657.1.S1_at--776--9232Chr09:6064357..6064716 (25 bp)
TCCATTTTACTCTGTCTCTTGATCT
NONE
Os.32657.1.S1_at--524--5591Chr01:5825539..5825563 (25 bp)
GAAATTTCTCTATAACCGCTTCAAA
LOC_Os01g10930
Os.32657.1.S1_at--810--10751Chr01:5825491..5825515 (25 bp)
TTGAACTTCCCCTGCTAGATAGTGG
LOC_Os01g10930
Os.32657.1.S1_at--1062--6311Chr01:5825428..5825452 (25 bp)
GATGCAATCTCTCCCTTTTCTTTTA
LOC_Os01g10930
Os.32657.1.S1_at--1--6811Chr01:5825387..5825411 (25 bp)
GTTTTAGTGTACAGATCCGAGTCCA
LOC_Os01g10930
Os.32657.1.S1_at--631--6111Chr01:5825369..5825393 (25 bp)
GAGTCCAAACTCCATATGAAGCATA
LOC_Os01g10930
Target Sequence 
GCAGTCGGCCCATGGCAGTATGAAGGTGAAGAAGAATTTGGTCGTTGGTGGATTGGGGGAGACCCATCAGGCGTATAAAT
ATGTTGGTGCTGATGGATGCTACTTCAGGGATGTTAGGAGCAAGAACTACACAGTGCTTTCAGACNACTCTGGTGATTCC
TGCACAAAGAGAAATCCTTACAATGGTGCTAAATTCTCTCTCAGGAACGATCAATCAGCAAGAAGGAAGTTGATGGTGAA
TAATCTNTAGTGTTGTATAGCTTGGAACAANTAGGGAACTGAACTGTCCATGGTTCTCTCCATTTTACTCTGTCTCTTGA
TCTCTTCAATAAAGGGAGTTTAGCTTAGCTTATCTTTGATGTGTAGTCAGTAAGAAACTTGGAAATTTCTCTATAACCGC
TTCAAATTGAATCCCCCTAGAGAAAAACTTTGAACTTCCCCTGCTAGATAGTGGAAAGTAAGCAATAGGCTATTCAGATC
AAGATTCTGAGGGATGCAATCTCTCCCTTTTCTTTTATCTTTCATGNTGAATTGTTTTAGTGTACAGATCCGAGTCCAAA
CTCCATATGAAGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis