Browse Element(s) Details


Os.32856.1.S1_at

Description gb:AK102618.1
DB_XREF= gi:32987827
TID=Os.32856.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsPK7 (B1131G08.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099G21, full insert sequence.
FL= gb:AK102618.1 gb:AK101442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5545011/11protein kinase PK4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55410Os.35371.1.S1_at11/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_x_at8/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_at5/111+32246342..32249175expressed protein
LOC_Os01g55420Os.13081.1.S1_at11/111+32252714..32253782expressed protein
LOC_Os01g55430Os.31726.1.S1_at11/111+32253984..32256853Tub family protein, expressed
LOC_Os01g55440Os.12657.1.S1_at11/111+32265336..32267032Protein kinase domain containing protein, expressed
LOC_Os01g55450Os.32856.1.S1_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55450Os.32856.1.S2_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55470OsAffx.10637.1.S1_s_at6/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.3.S1_s_at3/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.4.S1_s_at1/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_x_at7/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_at3/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55490Os.17701.2.S1_at11/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490Os.17701.1.S1_x_at10/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.4.S1_x_at2/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.3.S1_x_at1/111+32296141..32301019transcriptional regulator family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32856.1.S1_at--312--4291Chr01:32273947..32273971 (25 bp)
CCTCTAACCATAGGCGCGGAGATAT
LOC_Os01g55450
Os.32856.1.S1_at--485--6051Chr01:32273929..32273953 (25 bp)
GAGATATTTGAGCTTACACCCTCCC
LOC_Os01g55450
Os.32856.1.S1_at--1130--6651Chr01:32273837..32273861 (25 bp)
GTTGAAGCCAGGAATGCAGCACCTT
LOC_Os01g55450
Os.32856.1.S1_at--133--9051Chr01:32273823..32273847 (25 bp)
TGCAGCACCTTGTGCACCAGATGCT
LOC_Os01g55450
Os.32856.1.S1_at--1002--2891Chr01:32271696..32271719 (24 bp)
AAGGTCTTCAAGCTTACAGGCTCCC
LOC_Os01g55450
Os.32856.1.S1_at--643--9291Chr01:32271675..32271699 (25 bp)
TCCCCTCACCCTGAAGTTGATAGGA
LOC_Os01g55450
Os.32856.1.S1_at--236--2131Chr01:32271627..32271651 (25 bp)
ACAGGAGCTTCCATGCAGTTGACAG
LOC_Os01g55450
Os.32856.1.S1_at--649--3471Chr01:32271605..32271629 (25 bp)
CAGGGAGATCTCTTTTACCGGACCA
LOC_Os01g55450
Os.32856.1.S1_at--499--311Chr01:32271463..32271487 (25 bp)
ATACTCCGGTTGTGGATGGTGCCCA
LOC_Os01g55450
Os.32856.1.S1_at--32--2871Chr01:32271426..32271450 (25 bp)
AAGTGGATGTAGATACCCTGGTTGT
LOC_Os01g55450
Os.32856.1.S1_at--367--51Chr01:32271372..32271396 (25 bp)
ATTGTACTGGCCAGTTTTCTCTCGA
LOC_Os01g55450
Target Sequence 
CCTCTAACCATAGGCGCGGAGATATTTGAGCTTACACCCTCCCTTGTAGTAGTGGAAGTAAAAAGAAAGGCAGGTGATAA
TGAAGAGTATGAGGATTTCTGCAACATGGAGTTGAAGCCAGGAATGCAGCACCTTGTGCACCAGATGCTCCCAGCTCCAA
ATGGAACTCCTGTGAGTGAGAAGGTTGAAAGGTCTTCAAGCTTACAGGCTCCCCTCACCCTGAAGTTGATAGGAACAGAA
GGCAGCATGAGCTAGAGACAGGAGCTTCCATGCAGTTGACAGGGAGATCTCTTTTACCGGACCAAACCTGACCGGTCTGN
NTCCCGTTGATGAGCTCGTGGTTTNGATAACTAGCAAGANNTCNCTTTCTCNGGATGGCCTAAGATCGTTTTTAGGCAAT
GGATCGAGACAGTGGATGTAGATACTCCGGTTGTGGATGGTGCCCAGGTGGGCGTTTAAAGTGGATGTAGATACCCTGGT
TGTGGTGGTGCCCAGGTGGGCGTTTAAAGTGGATTGTACTGGCCAGTTTTCTCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis