Browse Element(s) Details


Os.32856.1.S2_at

Description gb:AK101442.1
DB_XREF= gi:32986651
TID=Os.32856.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsPK7 (B1131G08.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039E18, full insert sequence.
FL= gb:AK102618.1 gb:AK101442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5545011/11protein kinase PK4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55410Os.35371.1.S1_at11/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_x_at8/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_at5/111+32246342..32249175expressed protein
LOC_Os01g55420Os.13081.1.S1_at11/111+32252714..32253782expressed protein
LOC_Os01g55430Os.31726.1.S1_at11/111+32253984..32256853Tub family protein, expressed
LOC_Os01g55440Os.12657.1.S1_at11/111+32265336..32267032Protein kinase domain containing protein, expressed
LOC_Os01g55450Os.32856.1.S1_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55450Os.32856.1.S2_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55470OsAffx.10637.1.S1_s_at6/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.3.S1_s_at3/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.4.S1_s_at1/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_x_at7/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_at3/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55490Os.17701.2.S1_at11/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490Os.17701.1.S1_x_at10/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.4.S1_x_at2/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.3.S1_x_at1/111+32296141..32301019transcriptional regulator family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32856.1.S2_at--46--4051Chr01:32270927..32270951 (25 bp)
CGTTGTTGCGCATTTCCGTGATAAA
LOC_Os01g55450
Os.32856.1.S2_at--605--1771Chr01:32270898..32270922 (25 bp)
ACCGTGGTATGTCGTATTCTGTTAT
LOC_Os01g55450
Os.32856.1.S2_at--866--3191Chr01:32270872..32270896 (25 bp)
CAATGCTCTTTTTGTGGATTCGAAC
LOC_Os01g55450
Os.32856.1.S2_at--730--5611Chr01:32270807..32270831 (25 bp)
GACAACAGTGGCGAACCGGCGATTT
LOC_Os01g55450
Os.32856.1.S2_at--117--2632Chr02:10918487..10918914 (25 bp)
AACCGGCGATTTCATATGGCTCAGT
NONE
Os.32856.1.S2_at--995--2112Chr09:19748299..19748394 (25 bp)
ACATGGCATGATTAACCTTGGATTT
NONE
Os.32856.1.S2_at--940--371Chr01:32270682..32270706 (25 bp)
ATCACTATAACGACCTGTACTCTTG
LOC_Os01g55450
Os.32856.1.S2_at--499--3991Chr01:32270643..32270667 (25 bp)
CGTGCCAATTTCCTGGTATCTACAC
LOC_Os01g55450
Os.32856.1.S2_at--1142--6891Chr01:32270628..32270652 (25 bp)
GTATCTACACTCCTCAACGGATATG
LOC_Os01g55450
Os.32856.1.S2_at--377--2291Chr01:32270597..32270621 (25 bp)
AAATGCAGCATTTCTAACCCAACAG
LOC_Os01g55450
Os.32856.1.S2_at--289--2051Chr01:32270383..32270407 (25 bp)
AATGTTACTACCTCTTTACTTCTTG
LOC_Os01g55450
Target Sequence 
CGTTGTTGCGCATTTCCGTGATAAAGATCACCGTGGTATGTCGTATTCTGTTATACAATGCTCTTTTTGTGGATTCGAAC
TTCGAATATGGAGTTATGGACACGGGTGGTCATCGATGGAGACAACAGTGGCGAACCGGCGATTTCATATGGCTCAGTGA
GATGCTTTAAGGTACATAACAATTTGAGGTATGCATTCATTTAATCATGACATGGCATGATTAACCTTGGATTTGTGTGA
AAGCTATCACTATAACGACCTGTACTCTTGGTGATATTCCCCACCGTGCCAATTTCCTGGTATCTACACTCCTCAACGGA
TATGTCGTGGAAATGCAGCATTTCTAACCCAACAGATACAGGGATCATATTTCATCCTACAAAGATTATGTGAAAGAGAT
CAGCATAATAATGGAAATACGCTTAAAAAGTAAAATCATGAAAATTCCATGTGATAGTTAGGATCGACAATGACAATGAT
TATAATCATATCACAATATAAGATATAGCCTATTGTAATATAAGAATTTGATGCTCTGTTTTATAATGTTACTACCTCTT
TACTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32856.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis