Browse Element(s) Details


Os.33198.1.S1_at

Description gb:AK101407.1
DB_XREF= gi:32986616
TID=Os.33198.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686E09.21 (P0686E09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037H17, full insert sequence.
FL= gb:AK101407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43030Os.11466.1.S1_at11/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43030Os.46676.1.A1_x_at1/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43040Os.41257.1.S1_at11/111+24878962..24882427expressed protein
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33198.1.S1_at--18--951Chr01:24896357..24896381 (25 bp)
AGGAAGGTCATTCGCTTGCAGCTCA
LOC_Os01g43060
Os.33198.1.S1_at--15--10731Chr01:24896342..24896366 (25 bp)
TTGCAGCTCATCTGACTCTGAAGAT
LOC_Os01g43060
Os.33198.1.S1_at--262--671Chr01:24896256..24896280 (25 bp)
ATGAACCGGAGGCTCAAGCATCAAA
LOC_Os01g43060
Os.33198.1.S1_at--603--2531Chr01:24896191..24896215 (25 bp)
AACTAGGATCCTTGTCATCTTTGAC
LOC_Os01g43060
Os.33198.1.S1_at--739--7631Chr01:24896113..24896137 (25 bp)
GGGACTGAGACTACCAGGGCAGCTT
LOC_Os01g43060
Os.33198.1.S1_at--139--7931Chr01:24896022..24896046 (25 bp)
GGATTATTTGTTTTCGTCAGGGCCA
LOC_Os01g43060
Os.33198.1.S1_at--917--8871Chr01:24895995..24896019 (25 bp)
TGATGGCATGTCAAGGCCCTACTTG
LOC_Os01g43060
Os.33198.1.S1_at--280--4591Chr01:24895959..24895983 (25 bp)
GCGCAGCAGTATTGCCAGTTCTGAT
LOC_Os01g43060
Os.33198.1.S1_at--159--6432Chr05:9497804..9497823 (20 bp)
GATCTATACGACTATACGTGTCCCT
NONE
Os.33198.1.S1_at--220--9931Chr01:24895923..24895947 (25 bp)
TACGTGTCCCTTTAGTTCCTTGGAG
LOC_Os01g43060
Os.33198.1.S1_at--869--9231Chr01:24895907..24895931 (25 bp)
TCCTTGGAGCCGAGTTATTGATTTT
LOC_Os01g43060
Target Sequence 
AGGAAGGTCATTCGCTTGCAGCTCATCTGACTCTGAAGATGATAGTGATGGTAGTGACGAAGACAGCGGTGATGAAACAA
ACATGTCTAGCAAAGATGCGGATGAACCGGAGGCTCAAGCATCAAAAGGAAAGAAGCCCAATAAACGGCAGAAGATCGTT
GTTCTTAACTAGGATCCTTGTCATCTTTGACAAACCAAGGGGAGGGAGTTGTGCTAGTATTTCAGAAAGGTTGTGCTACA
GAATGGGACTGAGACTACCAGGGCAGCTTGAAGAACAGACATCAAGATATCAGAATTACCTACTGTATTTTGTTGTAGAA
TGCTGAGGTTAGCTAGGATTATTTGTTTTCGTCAGGGCCAAATGATGGCATGTCAAGGCCCTACTTGGGGAATACACTGC
GCAGCAGTATTGCCAGTTCTGATCTATACGACTATACGTGTCCCTTTAGTTCCTTGGAGCCGAGTTATTGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis